Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06686 ATGCAAATGAGGAAACCTGACATGATCATGGCAAAAGAACACAACAACAACATTATCAAGACCAAGCTAAGGAAAGGCTTATGGTCACCTGAGGAAGATGAGAAGTTGATAAGGTACATGATAACCAAAGGACAAGGCTGTTGGAGTGACATTGCTATAAATGCTGGCCTTCAAAGATGTGGCAAAAGCTGTCGTCTTCGTTGGATTAATTACTTGAGACCCGATCTTAAACGCGGCGCGTTTTCACCTCAAGAAGAAGAACTTATCATTCATTTCCACTCCATTCTTGGCAATAGATGGTCTCAGATTGCGGCGCGTCTCCCTGGTCGAACGGACAATGAAATAAAGAATTTTTGGAATTCTACATTGAAGAAGAGATTGAAAAACAATAGTACATCTCCAAACAATAGTGATTTATCGGAACAACCAATAGATAATGTTTTTGATGTGAAAAATAATATGATGATGGCGATGAATGAGCAAGAACTCATGACATTATGCATGGATTCATCCTCATCAACTTCATCATCATCCATGCAATCCATGCACATGCATGCCATGGTTTTGGCTGAACAATTTGATCCGTTTTCGTTGTTGTCGAATAATCGTTATGACATGACGACGAGTTTTCATGCTCATGGTCATGACATGCCAGCGTGTTTAACTCAAGTTGGTGGCATGGTTGATGATATTGGGCTTCATAGTGATGATTATGGGATTTTGGAGGATAGTAAAATGGGGTTATTAGAAAATGATTTTGAGCTTCCTCCACTAGAAAGTAGAATTAGCATTGAAGACAAGAGTGTCCCAATTGGTGATGATTATAATATGAAAAGCCATATCAACCACTTCAATAATAGTTGCTTCAATAACACTAATCATATTCAAAACTCTAATGTAGAGGATTTGTTTGGATTTGGAAATCATGGCCAAGGAGAAAACTTAAGATTGGGAGAATGGGATTTGGAGGGCTTAATGCAAGACATATCCTATTTTCCTCCTCTTGATTTTCAAGTTTAA 1020 0.3814 MQMRKPDMIMAKEHNNNIIKTKLRKGLWSPEEDEKLIRYMITKGQGCWSDIAINAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHFHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKNNSTSPNNSDLSEQPIDNVFDVKNNMMMAMNEQELMTLCMDSSSSTSSSSMQSMHMHAMVLAEQFDPFSLLSNNRYDMTTSFHAHGHDMPACLTQVGGMVDDIGLHSDDYGILEDSKMGLLENDFELPPLESRISIEDKSVPIGDDYNMKSHINHFNNSCFNNTNHIQNSNVEDLFGFGNHGQGENLRLGEWDLEGLMQDISYFPPLDFQV 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06686 339 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Vivi3g06686 339 SMART sant 77 125 IPR001005 -
Vivi3g06686 339 SMART sant 24 74 IPR001005 -
Vivi3g06686 339 CDD SANT 80 123 IPR001005 -
Vivi3g06686 339 FunFam MYB transcription factor 22 78 - -
Vivi3g06686 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 127 IPR017930 -
Vivi3g06686 339 Gene3D - 22 78 - -
Vivi3g06686 339 PANTHER MYB DOMAIN PROTEIN 55 17 272 - -
Vivi3g06686 339 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Vivi3g06686 339 CDD SANT 28 72 IPR001005 -
Vivi3g06686 339 Gene3D - 79 146 - -
Vivi3g06686 339 FunFam Transcription factor MYB46 79 146 - -
Vivi3g06686 339 Pfam Myb-like DNA-binding domain 78 122 IPR001005 -
Vivi3g06686 339 Pfam Myb-like DNA-binding domain 25 72 IPR001005 -
Vivi3g06686 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 72 IPR017930 -
Vivi3g06686 339 SUPERFAMILY Homeodomain-like 23 119 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06686 Vivi-Chr3 188341214 188343803 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06686 1 339 MYB Transcription Factor Family AT3G08500 45.358 1.74e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi3g06686 Myb_DNA-binding 4.2e-12 CL0123