Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06670 ATGATTGGAAAGCCCCTCCGAATAATGTTGATATGCACGTTTTATCAGAAAGGAGTTTGTGCTTATGGTAGTCGCTGCAGATATGATCATGTCAAAGCTTCTCGGGCACAGTCCTCTACTCCATCTTCCTCAATAATCGAAAACCAGTCCGCTGTGTCAGAATCTGTTCTACTCGGTAATACCAGAATTACAGCGAACAATGTTGCTACAGCTGCAGAATTTTCTCTTTTCAACAGTCCTTATGTTCTTCCTAGTGAACCCGTCTGGAATCAAGAATCTGCTAATCATGACTTCCTAAGAGAGGATGATGTTGGTCAAACAGTAATTACTTCACCTTCTGAGCTTCCAATTTGTTCATTTGCTGCTGCTGGAAACTGTCCACGAGGGGAACAATGTCCTCATGTACATGGAGATTTATGCCCCTCATGTGGAAAACATTGCTTGCATCCTTTCCGGCCCGAAGAAAGAGAAGAACATATGAAGAGTTGTGAAAATAAGCAAAAGCATCTTGAGGCACTGAAAAAAAGTCAGGAAGTTGAATGCTGTGTTTGTCTGGAACGTGTTCTTTCAAAGCCTACAGCAGCTGAACGAAAGTTTGGTCTTCTATCTGAATGTGATCATCCCTTCTGCATATCCTGTATTAGAAATTGGCGTAGTAGTAACCCAACATTAGGGATGGACGTGAATAGCACGCTGCGGGCCTGTCCTATCTGTCGCAAGCTATCTTACTTTGTCGTTCCAAGTGTTATTTGGTATGCTACAAGTGAAGAAAAACAGGAAATAGTTGATACCTACAAGGCAAAACTCAAGTCAATTGACTGCAAGCATTTTGAGTTTGGGGATGGAAACTGCCCTTTTGGAACTAGCTGCTTCTACAAGCATGCATATCGAGATGGCCGTCTTGAGGAGGTAGCTTTGCGACATCTTGGGGCTGCAGATGGTGACACAATAATTGCCAAAGACATCAGGTTATCGGATTTCCTTGCTACCATGCATTTAAGTTGA 1005 0.4279 MIGKPLRIMLICTFYQKGVCAYGSRCRYDHVKASRAQSSTPSSSIIENQSAVSESVLLGNTRITANNVATAAEFSLFNSPYVLPSEPVWNQESANHDFLREDDVGQTVITSPSELPICSFAAAGNCPRGEQCPHVHGDLCPSCGKHCLHPFRPEEREEHMKSCENKQKHLEALKKSQEVECCVCLERVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSNPTLGMDVNSTLRACPICRKLSYFVVPSVIWYATSEEKQEIVDTYKAKLKSIDCKHFEFGDGNCPFGTSCFYKHAYRDGRLEEVALRHLGAADGDTIIAKDIRLSDFLATMHLS 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06670 334 ProSiteProfiles Zinc finger RING-type profile. 181 239 IPR001841 -
Vivi3g06670 334 PANTHER MAKORIN-RELATED 11 305 IPR045072 GO:0000209|GO:0061630
Vivi3g06670 334 SMART ring_2 181 238 IPR001841 -
Vivi3g06670 334 CDD RING-HC_MKRN 179 239 - -
Vivi3g06670 334 Pfam CCCH-type zinc finger 11 30 IPR041367 -
Vivi3g06670 334 ProSiteProfiles Zinc finger C3H1-type profile. 112 139 IPR000571 GO:0046872
Vivi3g06670 334 SUPERFAMILY CCCH zinc finger 8 30 IPR036855 GO:0046872
Vivi3g06670 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 244 IPR013083 -
Vivi3g06670 334 ProSiteProfiles Zinc finger C3H1-type profile. 268 297 IPR000571 GO:0046872
Vivi3g06670 334 SUPERFAMILY RING/U-box 170 245 - -
Vivi3g06670 334 SMART c3hfinal6 6 32 IPR000571 GO:0046872
Vivi3g06670 334 SMART c3hfinal6 113 138 IPR000571 GO:0046872
Vivi3g06670 334 SMART c3hfinal6 268 296 IPR000571 GO:0046872
Vivi3g06670 334 ProSiteProfiles Zinc finger C3H1-type profile. 11 33 IPR000571 GO:0046872
Vivi3g06670 334 ProSitePatterns Zinc finger RING-type signature. 205 214 IPR017907 -
Vivi3g06670 334 Coils Coil 160 180 - -
Vivi3g06670 334 Gene3D - 9 139 - -
Vivi3g06670 334 Pfam Ring finger domain 180 239 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06670 Vivi-Chr3 187550234 187556463 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi3g06670 zf-RING_2 3e-06 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06670 K15687 - gmx:100787817 577.015