Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06660 ATGTGCCTCTGTCTTATATCAGCTACTCCTACAACATTAGAGGAGGCCAATGCTACTGAATGCATATTAAGAAATTTAAGGAATCTCAATCTGAAAATGAGAGTGACAAATCAGATGTTGTGGAGCACAATATGTAAACAAAGATTCCTCCCAAGAATCTACAGACTCCTATGTTCCTTTCTTGCAAAAGGTTTGATAGGAGAGGTTGTGGGAACATATTTCTTGATATTTGCTGGATGTGCTTCGATTATTGTGAACAACAACCATGACAACGTTGTCACGCTTGATGGTATTGCGATTGTCTGGGGACTTACTTTGTTGGTGTTGATTTACTCTCTCGGTCATATCTTCGGTGCTCATTTCAATCCTGCTGTTACCATTGCTTTTGCTAGCACAAGGAGGTTTCTATTAATACAGGTCAACAAAACACACAAGCTTTTTACTCTATAA 450 0.3867 MCLCLISATPTTLEEANATECILRNLRNLNLKMRVTNQMLWSTICKQRFLPRIYRLLCSFLAKGLIGEVVGTYFLIFAGCASIIVNNNHDNVVTLDGIAIVWGLTLLVLIYSLGHIFGAHFNPAVTIAFASTRRFLLIQVNKTHKLFTL 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06660 149 PANTHER AQUAPORIN NIP2-1 59 140 IPR034294 -
Vivi3g06660 149 ProSitePatterns MIP family signature. 120 128 IPR022357 -
Vivi3g06660 149 PRINTS Major intrinsic protein family signature 102 126 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi3g06660 149 PRINTS Major intrinsic protein family signature 63 82 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi3g06660 149 Gene3D Glycerol uptake facilitator protein. 45 141 IPR023271 -
Vivi3g06660 149 SUPERFAMILY Aquaporin-like 57 138 IPR023271 -
Vivi3g06660 149 Pfam Major intrinsic protein 62 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06660 Vivi-Chr3 187122280 187124419 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06660 16 140 Major Intrinsic Protein MIP AT4G19030 57.031 1.75e-37 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06660 K09874 - gmx:100813448 126.716