Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06657 ATGGCTCAAAGAATAGAAAACGAAGAAACTGAATTCAAAGTACCTGAATCGATTTCTCTTTGCATCAACAACTGCGGCGTAATCGGTAATCCTTCAACGAACAATATGTGTCAAAATTGCTTCACCGCTTCAACCGCTACCACTTCTTCCACCGTCGGGATAACCGGAGCCGGTTTAACCGGGACCGGAATCGGACCTCAATCTTCCAGATCTGTTCGATCTCCGAAGAGATCTCTACCGGAGGAATCGTCAACGGTTGTTACGGATCGGAGTTCGTTAGATAAACCGATGGTGTCCGAGGCGAAGCGTGTTGTTAGCCGATGCTCCGGTTGCCGGAGGAAGGTAGGGTTGACCGGATTCCGATGTAGGTGCGGTGATCTTTTCTGCTCCGAGCATCGTTACTCCGATCGGCATGATTGTAGCTATGATTATAAAAGTGCTGGAAGAGAAGCTATTGCGAGGGAGAATCCGGTTATCAGAGCAGCGAAAATCGTTAAGGTTTGA 504 0.4821 MAQRIENEETEFKVPESISLCINNCGVIGNPSTNNMCQNCFTASTATTSSTVGITGAGLTGTGIGPQSSRSVRSPKRSLPEESSTVVTDRSSLDKPMVSEAKRVVSRCSGCRRKVGLTGFRCRCGDLFCSEHRYSDRHDCSYDYKSAGREAIARENPVIRAAKIVKV 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06657 167 Pfam AN1-like Zinc finger 108 145 IPR000058 GO:0008270
Vivi3g06657 167 PANTHER AN1-TYPE ZINC FINGER PROTEIN 19 166 - -
Vivi3g06657 167 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 20 51 - -
Vivi3g06657 167 SMART AN1_Zf_4 108 145 IPR000058 GO:0008270
Vivi3g06657 167 Gene3D - 4 82 - -
Vivi3g06657 167 FunFam Zinc finger AN1-type containing 6 81 163 - -
Vivi3g06657 167 SMART A20_3 18 42 IPR002653 GO:0003677|GO:0008270
Vivi3g06657 167 ProSiteProfiles Zinc finger AN1-type profile. 102 148 IPR000058 GO:0008270
Vivi3g06657 167 FunFam Zinc finger A20 and AN1 domain-containing stress-associated protein 1 1 63 - -
Vivi3g06657 167 MobiDBLite consensus disorder prediction 57 91 - -
Vivi3g06657 167 SUPERFAMILY AN1-like Zinc finger 94 161 IPR035896 -
Vivi3g06657 167 Gene3D - 83 163 IPR035896 -
Vivi3g06657 167 Pfam A20-like zinc finger 19 41 IPR002653 GO:0003677|GO:0008270
Vivi3g06657 167 ProSiteProfiles Zinc finger A20-type profile. 15 49 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06657 Vivi-Chr3 186961122 186962052 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06657 8 167 C2H2 Transcription Factor Family AT3G52800 36.158 7.59e-34 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06657 - - pvu:PHAVU_005G036400g 238.039