Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06653 ATGTCCACCAGGGTTTGCAAGTTCTATGCCCGAGGTGGATGTTTGAAAGGGGATCAATGTGATTTTTCCCATCAAAGAAAGGATACTCATCAAAGAAAGGATACTCCACTTGATAAACAGATTTGCTCCTATTATCAGAAAGGGTCTTGTGCTTATGGTAGTCGGTGCAGATATAAGCATGTCAAAGCTTCTCAAGCATCATCTTTGGTTCCAAATTGTGCTGTGCCTCACGGTGTTAAACTAGCACCAAGTTGGGTTCCGAAGGTTACAAGAGTTCCTCCTCCACCTAGCAAGCGTGGCGTAACGAGTTTTCAACCCAACCATCTGGACTCTACCGATGTTGGTGAATCTAGTAGTACTGGTTCTAGTGCTAGACTGAATGGACATTTGTTTTGTAAATTTGCTGCAGCAAACTGCCCCTTTGGACAAGGATGTTCTCGTGTTCATGGAAATCAATGCTTGTACTGTAGAAAATATTGCTTGCATCCTAGTGATAAAAAGGAAAAAGAAAATCATTTGAAGACTTGTGACAAAAAGGAAAAGTATGTTCTGGCTTTGAAGAATAGCGAAGAAATAGAATGCAATGTTTGTCTCGAGCGTGTCCTTTCAAAACCCAAACCATCAGAACGTAAGTTTGGGTTGCTTCCAGAATGTGACCATGCTTTCTGTTTGTCATGTATCCGCAATTGGCGTAATAGTGCTCCAACCTCTGAAATGGAAACCGGCAATAATGTCAATACAGTTAGAACCTGCCCTGTTTGCCGCCAACTATCATATTTTGTCATTCCAAGTGGTATTTGGTATGCTACAAAGGAAGAAAAACAGGAAATTATTGATAACTACAAGGCAAACTGCAAATTGATTGATTGCAAACATTTTGACTCTGGTAATGGGAATTGTCCATTTGGGGCTAGTTGTTTCTACAAGCATACAGTGAAACCTGGCTCATACACATGGATACACCACAGGCCACCACCTCAACGAAAAGAAACCAATATTGATATGTATGACATGTTGGACATGCTAAGTGAAGTTGATCTATCAAGTGGAGAATTTTATTCTATCATGAGGGACTCAGAATTTTTCGATGGGATGGATCAATTAGAGATGATGGCTTTATCAGATTCTCTGGCTAGTGGTTCGGGTCCTCGTTTCGGTCCTTTTGAGTCCGATGATGAGGGGGAAACCTTAAATTTTTTCCGAATGGCTGCTATGTCGGAGGCCCTAGATGATTTTGGCCCTGATGATTTCGGCCCTGATGATTTTGGCCCAGATGATTTCGACCTAGATGATTTGGATGAATTGGATCCTATGGAGGCAGCCTTGATATCAATGATGATGCATTCCCATATTGATGAAGATAGTGAGGATGAATATTAG 1380 0.413 MSTRVCKFYARGGCLKGDQCDFSHQRKDTHQRKDTPLDKQICSYYQKGSCAYGSRCRYKHVKASQASSLVPNCAVPHGVKLAPSWVPKVTRVPPPPSKRGVTSFQPNHLDSTDVGESSSTGSSARLNGHLFCKFAAANCPFGQGCSRVHGNQCLYCRKYCLHPSDKKEKENHLKTCDKKEKYVLALKNSEEIECNVCLERVLSKPKPSERKFGLLPECDHAFCLSCIRNWRNSAPTSEMETGNNVNTVRTCPVCRQLSYFVIPSGIWYATKEEKQEIIDNYKANCKLIDCKHFDSGNGNCPFGASCFYKHTVKPGSYTWIHHRPPPQRKETNIDMYDMLDMLSEVDLSSGEFYSIMRDSEFFDGMDQLEMMALSDSLASGSGPRFGPFESDDEGETLNFFRMAAMSEALDDFGPDDFGPDDFGPDDFDLDDLDELDPMEAALISMMMHSHIDEDSEDEY 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06653 459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 284 IPR013083 -
Vivi3g06653 459 ProSiteProfiles Zinc finger RING-type profile. 194 255 IPR001841 -
Vivi3g06653 459 CDD RING-HC_MKRN 192 255 - -
Vivi3g06653 459 Pfam CCCH-type zinc finger 41 60 IPR041367 -
Vivi3g06653 459 MobiDBLite consensus disorder prediction 101 120 - -
Vivi3g06653 459 PANTHER MAKORIN-RELATED 1 332 IPR045072 GO:0000209|GO:0061630
Vivi3g06653 459 SMART c3hfinal6 2 26 IPR000571 GO:0046872
Vivi3g06653 459 SMART c3hfinal6 284 312 IPR000571 GO:0046872
Vivi3g06653 459 SMART c3hfinal6 126 151 IPR000571 GO:0046872
Vivi3g06653 459 SMART c3hfinal6 37 62 IPR000571 GO:0046872
Vivi3g06653 459 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Vivi3g06653 459 ProSitePatterns Zinc finger RING-type signature. 218 227 IPR017907 -
Vivi3g06653 459 Gene3D - 1 80 - -
Vivi3g06653 459 ProSiteProfiles Zinc finger C3H1-type profile. 284 313 IPR000571 GO:0046872
Vivi3g06653 459 ProSiteProfiles Zinc finger C3H1-type profile. 1 27 IPR000571 GO:0046872
Vivi3g06653 459 Pfam zinc-RING finger domain 193 256 IPR001841 -
Vivi3g06653 459 SUPERFAMILY CCCH zinc finger 36 60 IPR036855 GO:0046872
Vivi3g06653 459 SMART ring_2 194 254 IPR001841 -
Vivi3g06653 459 SUPERFAMILY RING/U-box 183 261 - -
Vivi3g06653 459 Pfam RNA-binding, Nab2-type zinc finger 6 24 - -
Vivi3g06653 459 Pfam RNA-binding, Nab2-type zinc finger 132 150 - -
Vivi3g06653 459 Pfam RNA-binding, Nab2-type zinc finger 289 310 - -
Vivi3g06653 459 ProSiteProfiles Zinc finger C3H1-type profile. 36 63 IPR000571 GO:0046872
Vivi3g06653 459 MobiDBLite consensus disorder prediction 90 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06653 Vivi-Chr3 186692506 186696631 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi3g06653 zf-RING_5 3e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06653 K15687 - gmx:100788886 605.134