Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06647 ATGGGTGTTATGTATGAAGAGATTAGAAGAAACCAAGAACTAGATTCAAAACAACACTATCACCAACAAAACAATTCAACACTATCAACTTCATTGTTTACAAACCTAATTGACAACAATAGCTATGTCAACAATGAAGAATCATTTACAACTGAGAATTATCTTCCATCCACAAGCTCAGAAATGGACACTATGTTATCCAAGTTGATATCATCCAATAATGGATGGAACAATTGTGAAGAACAATTGCAAGAGTTTGGTGTGAAGAATGTGAAGAAAGAAATAAGTGAATCTTACTCTTATGGTGGATCTGAGTTGGTTTATCAAGGCTTTTCAAGTGGTAATGGAAATGGTTTTTATGGATCTTTTGGTGGAGGAAACTTTAGGGATTCTGAGAATTGTGCTCAAGCTAAAATTGGTGGGAGGAATTGCAACAATCTTGTTAGGCAAAAGAGTTCACCTGCTGGTTTTTTCTCTAGTGAAAATGGTCTTACAACATTGAGGGAAGACTCAAATGGACAAGAAAGTATACATGGGACACTTAACTTCTCATCTATGCCATCTACATGCTTGAAAAGAATGCCACAAATAGCTGAAAATGGAATCCAAAGCATAGAACCAAATGGTGACTCCAAATCTCATCATGTGCCTAGTTTCACAAATGAATTTTGGGACAATTCATCATTCAATGCTCAAAAAACAGAAACAGAAGATGAAATCATGTTTTCTACTTCAAATGGCTTGGAATCTCAAGAAGCTGATTTTCGCTATCAAAATCTTGGTTTGACTCATCATTTAAGTTTGCCTAGTTCTTCAACAAAGGTAACATCGTCTATAGAGAAGTTTCTTCAAATTCAAGATTCGGTTCCGTGTAAAATTCGAGCGAAGAGAGGGTTTGCAACTCATCCGAGAAGCATTGCAGAGAGGGTTAGAAGAACGCGAATTAGTGATAGAATCAAGAAACTGCAAGGTCTTTTCCCAAAATCGGATAAGCAAACAAGTACAGCAGATATGTTGGATTTGGCAGTTGAGTACATTAAAGACTTGCAAGAACAAGTTCAGACACTCACAGATTGTAAAGAAAAATGCAAATGTACAAGACATTGTAGCTGA 1113 0.3621 MGVMYEEIRRNQELDSKQHYHQQNNSTLSTSLFTNLIDNNSYVNNEESFTTENYLPSTSSEMDTMLSKLISSNNGWNNCEEQLQEFGVKNVKKEISESYSYGGSELVYQGFSSGNGNGFYGSFGGGNFRDSENCAQAKIGGRNCNNLVRQKSSPAGFFSSENGLTTLREDSNGQESIHGTLNFSSMPSTCLKRMPQIAENGIQSIEPNGDSKSHHVPSFTNEFWDNSSFNAQKTETEDEIMFSTSNGLESQEADFRYQNLGLTHHLSLPSSSTKVTSSIEKFLQIQDSVPCKIRAKRGFATHPRSIAERVRRTRISDRIKKLQGLFPKSDKQTSTADMLDLAVEYIKDLQEQVQTLTDCKEKCKCTRHCS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06647 370 SMART finulus 305 355 IPR011598 GO:0046983
Vivi3g06647 370 CDD bHLH_AtbHLH_like 304 356 IPR045239 -
Vivi3g06647 370 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 299 349 IPR011598 GO:0046983
Vivi3g06647 370 Gene3D - 301 368 IPR036638 GO:0046983
Vivi3g06647 370 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 301 365 IPR036638 GO:0046983
Vivi3g06647 370 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 122 361 - -
Vivi3g06647 370 FunFam Transcription factor bHLH130 family 300 368 - -
Vivi3g06647 370 Pfam Helix-loop-helix DNA-binding domain 304 350 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06647 Vivi-Chr3 186149419 186152711 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06647 146 355 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 46.330 1.11e-47 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi3g06647 HLH 1.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06647 - - vvo:131662671 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g06647 3 186149419 186152711 Vivi7g04675 7 119135371 119150753 ECH
Vivi3g06647 3 186149419 186152711 Vivi3g06647 3 186149419 186152711 ECH