Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06637 ATGCAAGGCAAAAACTCCAAATTTGGACAAATATTCATGATTAAAGCTATTACATGTGGATCAATTTTGATTACTTTGGGTGTTGGAATTTTGATCAAGCTTCCTTTTGGTGCCAATAAGACTGTGCCAAGTGATTGCAGGGCTATGATTGGACAAGTTGCTAGAGGTGAAAGAACTAAGAAGCCCGTGTTGAAGGCTGGTAATGCATACCACAAGTTTAAAGTGAAGAGGAACTACTGGCCCAAGGTTCGTGGTGCACCTCATGGACAGAAGGTTGCTCTCATTGCTGCCAAGAGGACTGGTCTTAGGGGACAAGATGCTGCAAGTGCTGCTAAGGCCGATAAATGA 348 0.4339 MQGKNSKFGQIFMIKAITCGSILITLGVGILIKLPFGANKTVPSDCRAMIGQVARGERTKKPVLKAGNAYHKFKVKRNYWPKVRGAPHGQKVALIAAKRTGLRGQDAASAAKADK 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06637 115 Pfam Ribosomal Proteins L2, C-terminal domain 26 86 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vivi3g06637 115 PANTHER RIBOSOMAL PROTEIN L2 31 85 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vivi3g06637 115 SUPERFAMILY Translation proteins SH3-like domain 19 87 IPR008991 -
Vivi3g06637 115 SMART Ribosomal_L2_C_2 6 103 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vivi3g06637 115 Gene3D Ribosomal protein L2, domain 3 54 86 IPR014726 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06637 Vivi-Chr3 185838872 185839891 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06637 32 114 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 57.658 7.75e-31 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06637 K02938 - vvo:131657010 232.261