Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06596 ATGTGGAAATTTAAGCCATTCAGCCACAAAGAGCAAAATGGTATTGAAGGCCGTTCTATAGATGTTGGAAATCTTAAAATAAATATCCACAAGGTCATTGCTGAAGGAGGGTTCTCATGTGTCTACTTGGCTCGCGATTCTGTACATATGTCTAAACAGTATGCTTTGAAGCACATAATATGCAATGATGAAGAATCACTTGGGTTGGTGAAGAAGGAGATATCTGTCATGAAGTTGCTGATTGGACATCCCAATGTCGTCAAACTACATGCTCATGCCATCTATGACATGGGTAGAACCAAAGAGGCATTCCTTGTAATGGAATTTTGTGAGAAATCTCTGGTTACTGTGCTGGAGAGCCGAGGAGCTGGATATTTTGATGAGAGACAGGTTCTTTTAATCTTCAGGGATGTGTGTAATGCAGTTTTCGCCATGCACTGCCAGTCCCCGCCTATTGCTCACCGAGACTTGAAAGCGGAGAATCTTCTGTTAGGTTCAGATGGTTTATGGAAGTTGTGTGATTTTGGAAGCATTTCCACAAATCACAAACGTTTTGAGAAACCAGAAGAAATGGGAATTGAGGAAGATAATATCAGAAAGTACACAACTCCCGCCTACAGAGCTCCCGAGATGTGGGACCTGTTTCTCAGAGAAGTCATTAATGAGAAAGTAGACATATGGGCATTGGGATGTCTCCTTTTTCGTATATGCTACTTCAAAAGTGCATTTGATGGGGAATCAAAGCTCCAAGTCTTAAATGGAAACTACCGCATTCCTGATTTACCTAAATTCAGCTCGTCCCTCACAGACTTGATTAGAGACATGCTTCAAGCTAGACCAGACGACAGACCAGATATCACGCAGGTTTGGTTTCGTGTTAATGAAAAGCTACCCGGTGATTTCCAAAAGTCATTACCTGACAGGCCACCTGAATCGCCCTCTTCCAACAATCACGAAGGTGCTTCAATCCGCACAAACAAATCAAGTCCAATGCCTCGCAGAAATCCACCTTCTCCTCCATCAGTTGGAGAACCGAAAACTACCCCTCAGCCATCTCCTCCTTCCGGGGGAGGTGAGAGTGGGGGGCAGTTTGGTGCTTTCTGGTCCACTATGCATGCAAAGGATTCACTTGTCCCTGAGGAAAAGGGCAAGGCTATATATGATGAAGAACGATCTAGCCACCATGTGTCACTGAAACATGACAGAGTTCGTCCAGATAATGATCAGTTACCCAAAAATGTTGGTACAAACAAAGTGGCTAACACACCAACTCAGACTGTAAAAAGCAGTATACATGGAAAGTTACACAAGCCCGAAGTTGCATCTTCCAAGGACTTTGAAATTAATTTTTTCCCAGACAAAGATCATGCAAGTCAGAGGCATATGCCAAATCTGGAGAAGAATAATAATTTCCAAGACCAGTCTTTTAACACTTTTGTTGCTGAATTTGACACCGCCAAGCTGAACTCCGGGCATGGTAACAAATCCTCAAGGGAAGAAGTATTAGAGTCCGAGGTGGAGAAACTCAGAGAGCAGCTGAAGGAAACTAACTTAGAGAAATCTGAAATAACTGCGAAGTATGAAAAGCTTACTGCTATCTGCCGTTCACAGAGGCAAGAATTGCAGGACCTCAAGCAAGCACTTGCAGCAAGAACTCCATCTCCAAATAGAGAGAGTTTCAGAACCTCTCCTGGAGTTGCATCACCTGCATCTTTGCAGGATAGAAGTGAGTGGAAAACTCCTAGTTCAGAACTAAAGTCATGGTTAGCTTTCCCGGAGAAAACTGAACCACCGATTAAGTCCCTTTCAGCAGATAATGCTTCTAAATCCGTTAGGTCAAGAGAAGCTCAGCAGATCAAGCAGGTTACTCAACCAGCTTCTGATTTTGATTCTTGGGGCTTTGGTACAGATACATTTAGTGCTGCTCGTGCTGGTAGTGGTAGCCCACAGATGCCAAGACCTGGTGAAGGAAGTAAAGCTCATGTTTATGGTGAGACAAAGGGTTTTGAGAGCAAGTCAAATTCTCAACCTGCTGGATGGGCTGGTTTTTAA 2052 0.4352 MWKFKPFSHKEQNGIEGRSIDVGNLKINIHKVIAEGGFSCVYLARDSVHMSKQYALKHIICNDEESLGLVKKEISVMKLLIGHPNVVKLHAHAIYDMGRTKEAFLVMEFCEKSLVTVLESRGAGYFDERQVLLIFRDVCNAVFAMHCQSPPIAHRDLKAENLLLGSDGLWKLCDFGSISTNHKRFEKPEEMGIEEDNIRKYTTPAYRAPEMWDLFLREVINEKVDIWALGCLLFRICYFKSAFDGESKLQVLNGNYRIPDLPKFSSSLTDLIRDMLQARPDDRPDITQVWFRVNEKLPGDFQKSLPDRPPESPSSNNHEGASIRTNKSSPMPRRNPPSPPSVGEPKTTPQPSPPSGGGESGGQFGAFWSTMHAKDSLVPEEKGKAIYDEERSSHHVSLKHDRVRPDNDQLPKNVGTNKVANTPTQTVKSSIHGKLHKPEVASSKDFEINFFPDKDHASQRHMPNLEKNNNFQDQSFNTFVAEFDTAKLNSGHGNKSSREEVLESEVEKLREQLKETNLEKSEITAKYEKLTAICRSQRQELQDLKQALAARTPSPNRESFRTSPGVASPASLQDRSEWKTPSSELKSWLAFPEKTEPPIKSLSADNASKSVRSREAQQIKQVTQPASDFDSWGFGTDTFSAARAGSGSPQMPRPGEGSKAHVYGETKGFESKSNSQPAGWAGF 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06596 683 MobiDBLite consensus disorder prediction 390 408 - -
Vivi3g06596 683 MobiDBLite consensus disorder prediction 300 366 - -
Vivi3g06596 683 MobiDBLite consensus disorder prediction 594 683 - -
Vivi3g06596 683 Coils Coil 499 547 - -
Vivi3g06596 683 MobiDBLite consensus disorder prediction 601 634 - -
Vivi3g06596 683 ProSiteProfiles Protein kinase domain profile. 27 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g06596 683 Pfam Protein kinase domain 29 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g06596 683 CDD STKc_GAK_like 26 298 - -
Vivi3g06596 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Vivi3g06596 683 MobiDBLite consensus disorder prediction 548 579 - -
Vivi3g06596 683 MobiDBLite consensus disorder prediction 668 683 - -
Vivi3g06596 683 PANTHER SERINE/THREONINE PROTEIN KINASE 1 658 - -
Vivi3g06596 683 MobiDBLite consensus disorder prediction 308 331 - -
Vivi3g06596 683 MobiDBLite consensus disorder prediction 552 578 - -
Vivi3g06596 683 MobiDBLite consensus disorder prediction 390 420 - -
Vivi3g06596 683 SUPERFAMILY Protein kinase-like (PK-like) 28 341 IPR011009 -
Vivi3g06596 683 Gene3D Transferase(Phosphotransferase) domain 1 9 303 - -
Vivi3g06596 683 SMART serkin_6 27 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g06596 683 MobiDBLite consensus disorder prediction 332 352 - -
Vivi3g06596 683 FunFam probable serine/threonine-protein kinase DDB_G0280111 10 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06596 Vivi-Chr3 183163135 183167651 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06596 26 292 Miscellaneous Gene Families AT2G34180 30.249 4.11e-21 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Vivi3g06596 Pkinase 4.8e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06596 K08853 - gmx:100780879 1000.73