LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi3g06594	ATGTGGAAATTTAAGCCATTCAGCCACAAAGAGCAAAATGGTATTGAAGGCCGTTCTATAGATGTTGGAAATCTTAAAATAAATATCCACAAGGTCATTGCTGAAGGAGGGTTCTCATGTGTCTACTTGGCTCGCGATTCTGTACATATGTCTAAACAGTATGCTTTGAAGCACATAATATGCAATGATGAAGAATCACTTGGGTTGGTGAAGAAGGAGATATCTGTCATGAAGTTGCTGATTGGACATCCCAATGTCGTCAAACTACATGCTCATGCCATCTATGACATGGGTAGAACCAAAGAGGCATTCCTTGTAATGGAATTTTGTGAGAAATCTCTGGTTACTGTGCTGGAGAGCCGAGGAGCTGGATATTTTGATGAGAGACAGGTTCTTTTAATCTTCAGGGATGTGTGTAATGCAGTTTTCGCCATGCACTGCCAGTCCCCGCCTATTGCTCACCGAGACTTGAAAGCGGAGAATCTTCTGTTAGGTTCAGATGGTTTATGGAAGTTGTGTGATTTTGGAAGCATTTCCACAAATCACAAACGTTTTGAGAAACCAGAAGAAATGGGAATTGAGGAAGATAATATCAGAAAGTACACAACTCCCGCCTACAGAGCTCCCGAGATGTGGGACCTGTTTCTCAGAGAAGTCATTAATGAGAAAGTAGACATATGGGCATTGGGATGTCTCCTTTTTCGTATATGCTACTTCAAAAGTGCATTTGATGGGGAATCAAAGCTCCAAGTCTTAAATGGAAACTACCGCATTCCTGATTTACCTAAATTCAGCTCGTCCCTCACAGACTTGATTAGAGACATGCTTCAAGCTAGACCAGACGACAGACCAGATATCACGCAGGTTTGGTTTCGTGTTAATGAAAAGCTACCCGGTGATTTCCAAAAGTCATTACCTGACAGGCCACCTGAATCGCCCTCTTCCAACAATCACGAAGGTGCTTCAATCCGCACAAACAAATCAAGTCCAATGCCTCGCAGAAATCCACCTTCTCCTCCATCAGTTGGAGAACCGAAAACTACCCCTCAGCCATCTCCTCCTTCCGGGGGAGGTGAGAGTGGGGGGCAGTTTGGTGCTTTCTGGTCCACTATGCATGCAAAGGATTCACTTGTCCCTGAGGAAAAGGGCAAGGCTATATATGATGAAGAACGATCTAGCCACCATGTGTCACTGAAACATGACAGAGTTCGTCCAGATAATGATCAGTTACCCAAAAATGTTGGTACAAACAAAGTGGCTAACACACCAACTCAGACTGTAAAAAGCAGTATACATGGAAAGTTACACAAGCCCGAAGTTGCATCTTCCAAGGACTTTGAAATTAATTTTTTCCCAGACAAAGATCATGCAAGTCAGAGGCATATGCCAAATCTGGAGAAGAATAATAATTTCCAAGACCAGTCTTTTAACACTTTTGTTGCTGAATTTGACACCGCCAAGCTGAACTCCGGGCATGGTAACAAATCCTCAAGGGAAGAAGTATTAGAGTCCGAGGTGGAGAAACTCAGAGAGCAGCTGAAGGAAACTAACTTAGAGAAATCTGAAATAACTGCGAAGTATGAAAAGCTTACTGCTATCTGCCGTTCACAGAGGCAAGAATTGCAGGACCTCAAGCAAGCACTTGCAGCAAGAACTCCATCTCCAAATAGAGAGAGTTTCAGAACCTCTCCTGGAGTTGCATCACCTGCATCTTTGGATAGAAGTGAGTGGAAAACTCCTAGTTCAGAACTAAAGTCATGGTTAGCTTTCCCGGAGAAAACTGAACCACCGATTAAGTCCCTTTCAGCAGATAATGCTTCTAAATCCGTTAGGTCAAGAGAAGCTCAGCAGATCAAGCAGGTTACTCAACCAGCTTCTGATTTTGATTCTTGGGGCTTTGGTACAGATACATTTAGTGCTGCTCGTGCTGGTAGTGGTAGCCCACAGATGCCAAGACCTGGTGAAGGAAGTAAAGCTCATGTTTATGGTGAGACAAAGGGTTTTGAGAGCAAGTCAAATTCTCAACCTGCTGGATGGGCTGGTTTTTAA	2049	0.4348	MWKFKPFSHKEQNGIEGRSIDVGNLKINIHKVIAEGGFSCVYLARDSVHMSKQYALKHIICNDEESLGLVKKEISVMKLLIGHPNVVKLHAHAIYDMGRTKEAFLVMEFCEKSLVTVLESRGAGYFDERQVLLIFRDVCNAVFAMHCQSPPIAHRDLKAENLLLGSDGLWKLCDFGSISTNHKRFEKPEEMGIEEDNIRKYTTPAYRAPEMWDLFLREVINEKVDIWALGCLLFRICYFKSAFDGESKLQVLNGNYRIPDLPKFSSSLTDLIRDMLQARPDDRPDITQVWFRVNEKLPGDFQKSLPDRPPESPSSNNHEGASIRTNKSSPMPRRNPPSPPSVGEPKTTPQPSPPSGGGESGGQFGAFWSTMHAKDSLVPEEKGKAIYDEERSSHHVSLKHDRVRPDNDQLPKNVGTNKVANTPTQTVKSSIHGKLHKPEVASSKDFEINFFPDKDHASQRHMPNLEKNNNFQDQSFNTFVAEFDTAKLNSGHGNKSSREEVLESEVEKLREQLKETNLEKSEITAKYEKLTAICRSQRQELQDLKQALAARTPSPNRESFRTSPGVASPASLDRSEWKTPSSELKSWLAFPEKTEPPIKSLSADNASKSVRSREAQQIKQVTQPASDFDSWGFGTDTFSAARAGSGSPQMPRPGEGSKAHVYGETKGFESKSNSQPAGWAGF	682

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi3g06594	682	MobiDBLite	consensus disorder prediction	390	408	-	-
	Vivi3g06594	682	MobiDBLite	consensus disorder prediction	300	366	-	-
	Vivi3g06594	682	Coils	Coil	499	547	-	-
	Vivi3g06594	682	PANTHER	SERINE/THREONINE PROTEIN KINASE	1	656	-	-
	Vivi3g06594	682	ProSiteProfiles	Protein kinase domain profile.	27	297	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi3g06594	682	MobiDBLite	consensus disorder prediction	548	578	-	-
	Vivi3g06594	682	Pfam	Protein kinase domain	29	289	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi3g06594	682	CDD	STKc_GAK_like	26	298	-	-
	Vivi3g06594	682	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	152	164	IPR008271	GO:0004672\|GO:0006468
	Vivi3g06594	682	MobiDBLite	consensus disorder prediction	552	577	-	-
	Vivi3g06594	682	MobiDBLite	consensus disorder prediction	308	331	-	-
	Vivi3g06594	682	MobiDBLite	consensus disorder prediction	667	682	-	-
	Vivi3g06594	682	MobiDBLite	consensus disorder prediction	639	682	-	-
	Vivi3g06594	682	MobiDBLite	consensus disorder prediction	390	420	-	-
	Vivi3g06594	682	SUPERFAMILY	Protein kinase-like (PK-like)	28	341	IPR011009	-
	Vivi3g06594	682	Gene3D	Transferase(Phosphotransferase) domain 1	9	303	-	-
	Vivi3g06594	682	SMART	serkin_6	27	291	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi3g06594	682	MobiDBLite	consensus disorder prediction	332	352	-	-
	Vivi3g06594	682	FunFam	probable serine/threonine-protein kinase DDB_G0280111	10	305	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi3g06594	Vivi-Chr3	183163135	183167658	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi3g06594	26	292	Miscellaneous Gene Families	AT2G34180	30.249	3.99e-21	95.5

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NAK	Vivi3g06594		Pkinase	4.8e-39	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi3g06594	K08853		-	gmx:100780879	1001.12