Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06578 ATGTCAAGTTCAAGAGAAGATAATTATCAAGCAAAGGAAGAAGAAGAAGGTAATAATAATAATAGTATGAATAACATTGAGAAAAGTTCTAAAGCAGCTTCAAGTAGTTCAAGACAATGGTCATCATCAAGTTTAAGAAATCCAAGAATTGTGAGAGTATCAAGAACATTTGGAGGCAAAGATAGGCATAGCAAAGTTTGCACAATAAGAGGGTTAAGAGATAGAAGAATTAGGCTTTCGGTTCCGACCGCAATTCAATTGTATGATCTTCAAGACAAGCTTGGTTTAGGACAACCAAGCAAAGTTATAGATTGGCTACTCGAAGCAACGAAATTCGATATTGATAAACTTCCTCCGCTTCAATTCCCTCAAAGCTTTTCGCAATTTCATCATCATGTTCTTCCACAAACCCTACTTCCTTTTCATGATCATCAATCAAGTAATGTTTTGTCTCATGAGCTTTCTCTTGGTCCTTTGTATGATCCTAACTCTTCTACATTTGTTGGAATTCAAAATCTCATGGCAAGATCGAAGTTTTGGGATGTGGATTCGACGAGAGAGAATAAAGGTAAAGAGGTTGAAAGAGAGTACTTTTGTGAAAAGGGTAAGTGGATCAAAACAAATGATGAAGAGAATCAAGTTGGAGAAGCTAGTTACAACAACTTTCATCAAGTTTCAACTCAAAAGCTTTTTCCTATGGAGACTCATTCTAATTTTCTTAACAATGCTATGTCATATAACAACAACTACCATTCAGAAGCTTCTACTTTGTCTTTATCTCAATTTGGAAGTGGTAATGGATTGTTCCAACCTCATCAACATCAAGTAGATCCAAATCAAAGTAATGGAAATGCTTTTCAATTTCCATTTTCTTTTCAAAATTCACAACTATTGTTTGGTCCTTCTTCTTCTACTACACAACCATCATCATCACTTTTGAACAATCCTTTTATGAGCCACTCAATTGAAAATGATCCAAGAGTACCACCATTCAACCATTTTCAGTTCTCAAATTCAAGTTCTTCTCAACCTATGCCTCATTCTCTCATTCCATCTTTTCATCACTCATTCAATTCGCCTCCCGTAAGACCTTTTCCGATTCCATTTAGCTCGAAGCTTCTTGACTCAGATAACAATGACAATAGCAACCAGCTGGATGATAGGGATTGTCGCGATCGCTCTTGA 1185 0.3612 MSSSREDNYQAKEEEEGNNNNSMNNIEKSSKAASSSSRQWSSSSLRNPRIVRVSRTFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLGQPSKVIDWLLEATKFDIDKLPPLQFPQSFSQFHHHVLPQTLLPFHDHQSSNVLSHELSLGPLYDPNSSTFVGIQNLMARSKFWDVDSTRENKGKEVEREYFCEKGKWIKTNDEENQVGEASYNNFHQVSTQKLFPMETHSNFLNNAMSYNNNYHSEASTLSLSQFGSGNGLFQPHQHQVDPNQSNGNAFQFPFSFQNSQLLFGPSSSTTQPSSSLLNNPFMSHSIENDPRVPPFNHFQFSNSSSSQPMPHSLIPSFHHSFNSPPVRPFPIPFSSKLLDSDNNDNSNQLDDRDCRDRS 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06578 394 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 22 348 IPR005333 GO:0003700
Vivi3g06578 394 MobiDBLite consensus disorder prediction 331 347 - -
Vivi3g06578 394 MobiDBLite consensus disorder prediction 15 46 - -
Vivi3g06578 394 MobiDBLite consensus disorder prediction 299 347 - -
Vivi3g06578 394 ProSiteProfiles TCP domain profile. 59 117 IPR017887 -
Vivi3g06578 394 Pfam TCP family transcription factor 59 129 IPR017887 -
Vivi3g06578 394 MobiDBLite consensus disorder prediction 299 321 - -
Vivi3g06578 394 MobiDBLite consensus disorder prediction 1 46 - -
Vivi3g06578 394 MobiDBLite consensus disorder prediction 368 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06578 Vivi-Chr3 182461299 182463351 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06578 6 255 TCP Transcription Factor Family AT5G60970 46.718 1.25e-54 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vivi3g06578 TCP 1.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06578 - - vvo:131656990 725.702