Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06548 ATGAAACCTCTATATGTGCTAAATATCTATATCTATGTCCAACTGCAGATGGCTGAAGAGTATAGACTTGTACCAGATACATTGTATTTGACAGTAAACTACATTGATCGGTATCTATCTGGGAATGCCATGAACAGGCAACAATTACAATTACTTGGAGTTGCTTCTATGATGATTGCATTTAAATATGAGGAGATTTGTGCACCTCAGTTTTTAAAACATACAAATCTCAAGCAAATCATTTCTTAA 249 0.3373 MKPLYVLNIYIYVQLQMAEEYRLVPDTLYLTVNYIDRYLSGNAMNRQQLQLLGVASMMIAFKYEEICAPQFLKHTNLKQIIS 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06548 82 PANTHER CYCLINS 15 72 IPR039361 -
Vivi3g06548 82 Pfam Cyclin, N-terminal domain 13 71 IPR006671 -
Vivi3g06548 82 SUPERFAMILY Cyclin-like 15 73 IPR036915 -
Vivi3g06548 82 Gene3D - 16 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06548 Vivi-Chr3 180759205 180760047 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06548 15 70 Core Cell Cycle Gene Families AT1G44110 80.357 2.74e-27 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06548 K06627 - vvo:131656970 165.622