Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06539 ATGTCTCTCTGGCTCATAGCACTCTCCACTTTCATATTATCTATCTTGATATACCGTTTTCTCAAATCCACGACAAAGTCTTCTTCTTCACTGCCACTTCCACCTGGACCAAAACCATGGCCTATAATAGGTAACATGCCTCACCTAGGTGCTGCCCCACACCAATCTATTGCTGCCTTGGCTCAAATTCATGGCCCTTTGATGCACCTCAAATTAGGGTTTGTCGATGTTATCGTGGCCGCTTCCGCCTCCGTGGCTGAACAATTCTTAAAGGTTCATGATGCTAACTTTAGTAGCCGGCCACCTAATGCCGCAGCTAAAAATATGGTTTATAATTATCAAGATCTTGTGTTTGCTCCTTATGGCCCAAGGTGGAGATTGCTCCGAAAGATCTCTTCTGTTCATCTCTTTTCGAATAAAGTTATGGCCGAATTTCAACATTTACGTGAGGAAGAGACAGCAAGATTGACAAGCAAATTGGCAAGTAGTTATTCCGACGCAAAAGCGGTGAAATTGGGACAATTATTGAGTGTATGTACAACCAATGCACTTGCTAGGGCTATGTTAGGAAGAAGAGTGTTCAATGATGAAAATAGTGGAAATGACTCAAAAGCTAATGACTTCAAGGATATGATTCTTGAAACAATGGTGTTAGCTGGAGTTTTCAACATTAGTGATTTCATTCCTTCATTGGAATGGTTAGATCTTCAAGGAGTTCAAGCAAAAATGAAAATATTACACAAAAAATTTGATGCATTTTTAACAAACATTATTGAAGAACATGAGACTTCTAATTCTAAAAGTGAGAAACATAAGGATTTGTTGACTACTTTGTTGGCACTTAGAGATGAAGGAGATGATGAAGGAAATAAGCTCACTAATACTGAGATCAAAGCTTTACTCTTGAACATGTTTGTAGCTGGAACAGACACATCATCAAGTACTACAGAATGGGCCATTGCAGAACTGATCAAAAACCCAAAAATCTTAGCCCAAGTCCAACAAGAATTAGACAGTGTTGTGGGTCGAGACAGGAACGTGAAAGAAGAGGACATACCAAACCTACCTTACCTACATGCAGTTATAAAAGAAACATTTCGTTTGCATCCATCAACACCTCTTTCCCTTCCAAGAATAGCTTCGGAAAGTTGTGAGATTTTTGGATACCACATTCCAAAAGGTGCAACTGTTTTGATTAATGTATGGGCCATAGCCCGTGACCCAAAGCAATGGGCTGATCCTTTAGTATTCAAACCCGAAAGATTCTTACCAGGTGGTGACAAGTGTGATGTTGATATTAAGGGAAATGATTTTGAAGTTATACCTTTTGGTGCTGGACGTAGAATTTGTGTTGGGATGAGTCTTGGGCTTCGTATGGTTCAGCTTTTAACTGCTACGTTGGCCCATTCGTTTAATTGGGAACTTGAAAATGGGCTCAAACCTGAAAAAATGAACATGGATGAGGGTTTTGGACTTACTCTTCAACGAGCTGAGCCATTATCAGTTCACCCTAAACCTAGGCTCTCGCCACACGTGTACTCGTCAGGTTTCTGA 1554 0.4035 MSLWLIALSTFILSILIYRFLKSTTKSSSSLPLPPGPKPWPIIGNMPHLGAAPHQSIAALAQIHGPLMHLKLGFVDVIVAASASVAEQFLKVHDANFSSRPPNAAAKNMVYNYQDLVFAPYGPRWRLLRKISSVHLFSNKVMAEFQHLREEETARLTSKLASSYSDAKAVKLGQLLSVCTTNALARAMLGRRVFNDENSGNDSKANDFKDMILETMVLAGVFNISDFIPSLEWLDLQGVQAKMKILHKKFDAFLTNIIEEHETSNSKSEKHKDLLTTLLALRDEGDDEGNKLTNTEIKALLLNMFVAGTDTSSSTTEWAIAELIKNPKILAQVQQELDSVVGRDRNVKEEDIPNLPYLHAVIKETFRLHPSTPLSLPRIASESCEIFGYHIPKGATVLINVWAIARDPKQWADPLVFKPERFLPGGDKCDVDIKGNDFEVIPFGAGRRICVGMSLGLRMVQLLTATLAHSFNWELENGLKPEKMNMDEGFGLTLQRAEPLSVHPKPRLSPHVYSSGF 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06539 517 Pfam Cytochrome P450 34 493 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g06539 517 Gene3D Cytochrome P450 19 509 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g06539 517 PRINTS E-class P450 group I signature 450 473 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g06539 517 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g06539 517 PRINTS E-class P450 group I signature 85 106 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g06539 517 PRINTS E-class P450 group I signature 359 377 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g06539 517 PRINTS E-class P450 group I signature 440 450 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g06539 517 PRINTS E-class P450 group I signature 179 197 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g06539 517 PRINTS E-class P450 group I signature 296 313 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g06539 517 PRINTS E-class P450 group I signature 400 424 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g06539 517 PRINTS E-class P450 group I signature 316 342 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g06539 517 PANTHER CYTOCHROME P450 98A9 9 514 - -
Vivi3g06539 517 FunFam Cytochrome P-450 19 22 505 - -
Vivi3g06539 517 PRINTS P450 superfamily signature 307 324 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g06539 517 PRINTS P450 superfamily signature 441 450 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g06539 517 PRINTS P450 superfamily signature 360 371 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g06539 517 PRINTS P450 superfamily signature 450 461 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g06539 517 SUPERFAMILY Cytochrome P450 34 507 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g06539 517 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 443 452 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06539 Vivi-Chr3 179842890 179849967 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06539 2 516 Cytochrome P450 AT5G07990 63.760 0.0 696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06539 K05280 - gmx:547475 787.719