Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06496 ATGTCTACAAAAGTTGTAACTGCCGTACCACCCAAGATCACTGCAGTTTCTGCAATTGTTCCTGGCAAGTTTGAGTTTCGTCTAAGGGTTCGTGTGATTCACTATTGGACACTTCCTGAACGCTACAACTCTACAGATATAGGAAGTTTGCATATGATCTTGCTAGATGATAAGTGCGGCAAAATTCAGGCCACCGTTAGAAAGAATTTGATTCCTACATTTAAGGAGCAGATTGAAGTAGGTTCCTCATACGTGTTTGAAAATCTTATGGTGGGTAGCAACCACCCTTCCTACAAAGCTAAGACACATAAGTACAAACTGAATTTCATGCAATCAACTAAAGTATTCAAAGTTAATGCTCCTGATATACCTCAATATCATTTTGATTTCATACCTTTCTCTGAAATTTTGAGTGCTACTAAAGAAGACAGGTTACTTGATATTATTGGCCATGTTGTGGAAACAAATGTCGTCAATGAAGTTGAGAAAAATGGAAAAAAGAGTAAGGTTATGGATCTGACTATTGAAGATTTAGAGAGCAACAAAATTCATTGCACATTGTGGGAGGATTTTGCAGAAATGATGCAGAAATTTATGGACAACCATAAATCTTCTGATCCAATAATCATGATACTTCAATTATGCAAACTGAAAAAGTTTTTTGGTGCTATGGGAGTCTCTAATGCTTACTATGGAACTAAAATGATGTTGAATGCGGATTTGATAGACACTGCTAATTATATATCTAAGATGAATGGTACTGAGATAGAAATCACACAAGGAGTGAGTCAAATGTCTGGTCCAACAATTGTCCCTCTAGCAGATGACTTGCTCCAGACACAAAAAATGACAATTGAGAACTTGATAGAATCCACTGAGAAATGTGTTGGTACTGTTCTAGCAAGAACATGTGAACTTGAGAGAGATCTTGGATGGTATTATCAAGCTTGCACAAAGTGTGCATCAAAGGTTACTACTAGAACTGGGGTTATTTACTGTGATAAATGCCAGCAACCAAGGACCGCTATTCCTAGGCAAGTAATTTAG 1047 0.3715 MSTKVVTAVPPKITAVSAIVPGKFEFRLRVRVIHYWTLPERYNSTDIGSLHMILLDDKCGKIQATVRKNLIPTFKEQIEVGSSYVFENLMVGSNHPSYKAKTHKYKLNFMQSTKVFKVNAPDIPQYHFDFIPFSEILSATKEDRLLDIIGHVVETNVVNEVEKNGKKSKVMDLTIEDLESNKIHCTLWEDFAEMMQKFMDNHKSSDPIIMILQLCKLKKFFGAMGVSNAYYGTKMMLNADLIDTANYISKMNGTEIEITQGVSQMSGPTIVPLADDLLQTQKMTIENLIESTEKCVGTVLARTCELERDLGWYYQACTKCASKVTTRTGVIYCDKCQQPRTAIPRQVI 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06496 348 PANTHER OS03G0429900 PROTEIN 15 345 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vivi3g06496 348 SUPERFAMILY Nucleic acid-binding proteins 12 118 IPR012340 -
Vivi3g06496 348 CDD RPA1_DBD_B_like 147 249 - -
Vivi3g06496 348 Gene3D - 121 259 IPR012340 -
Vivi3g06496 348 SUPERFAMILY Nucleic acid-binding proteins 127 249 IPR012340 -
Vivi3g06496 348 CDD RPA1_DBD_A_like 27 115 - -
Vivi3g06496 348 Pfam Domain of unknown function DUF223 52 140 IPR003871 -
Vivi3g06496 348 Gene3D - 11 117 IPR012340 -
Vivi3g06496 348 Gene3D - 273 348 IPR012340 -
Vivi3g06496 348 SUPERFAMILY Nucleic acid-binding proteins 287 340 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06496 Vivi-Chr3 178777034 178778800 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06496 9 338 Core DNA Replication Machinery Family AT2G06510 24.929 3.00e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06496 - - vvo:131659456 686.026