Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06457 ATGAGTTCCTTCCAAGTTATCTCCACCACTATAATCCATGCACAAAATCACACAAATGATCATACAATCGATCTAACACCATGGGATCTACAATTCCTCCCATATGGAGTCAACCAAAAAGGCCTTCTTTATCACCACCCTTGCAAATTAGATACCACAAATCAAATCCAACGCCTCCAACACTCTCTTTCCTCTACCCTTGAATTTTTTCCACCTTTCACAGGTCGTCTCAAAATCACGAAACACGAAGATAACACTATCTCATGTTCTATACTGTGTAACAATGAAGGTGCACTCTTTATTCACGCCGAAGCAAAAAATATTAGTGTTTCCGACATTCTTGAACCTATTTATCTTCCTCGTGTTGTATACTCAATTTTTCCACTTGGCAAAGTCAAAAACTATGAAGGGACATCACAACCATTACTTGCTGTCCAAGTAACAGAGTTAACTGATGGCATATTCATTGGTTGTACAGTCAACCATGTGGTCGCTGATGGTAACTCAATTTGGCATTTCATCAATTCATGGGCCGAAATTTCAAAGGGGGCTCTTCAAATATCGAAAACCCCATCATTCGAACGATGGTTTCCAAAAGGTATTCAACTTCCCATTCGTTTTCCTTTCATAGTGGAACCACAAAATAATATTTCTAATGATGATAATGATGAAGAAGAATCACCCAACCACTCAGAGAGAATGTTTCATTTTACAAAAGAGAATATAGCCAAACTAAAATTCAAAGCAAACTTAGAGGCTGGTACAAAGAACATATCTTCATTGCAAGCAGTTTTCACTCACATTTGGCGCTCTATTATACGTTGCAAAAACCTTGACCCGCAAGAAAAAGTTAATTATATGATGGTTATAGGCGTTAGGCCAAGGTTTATTCCTCCGTTGGAAAAGAATTATTTTGGTAATGCTGTCATAGATTGTGAAGTTACCATGAAAGTTTGTGAATTGTTGGACAACGACGGACTTGGTAAAGGTGCTTGGGAGATGAACAAGATAATCGCTTTGTACTCTGACGAGAAGTTGAAAAGTCGTTATGAAAATTGGTTAACAACTCCTAGTTTTGCTCGCCATGGTGTTGTGACAAATAGTAATTCATTGGCGCTTGGTAGTTCGCCTTGGTTTGATGTTTATGGTAATGATTTTGGTTGGGGAAAACCAGTGGCGGTTCGTAATGGAGGTGCGAATAAAAGAAATGGAAAGATTTATGTGTGTGCTGGAGCAGAAGAAGGTAGTATGAATTTTGAAGTTTGTCTTCCTTATGATATTTTGGAAGCAATTGGAAATGATTCTGAATTTATGGATGCTGTGTCTAGCTAA 1332 0.3806 MSSFQVISTTIIHAQNHTNDHTIDLTPWDLQFLPYGVNQKGLLYHHPCKLDTTNQIQRLQHSLSSTLEFFPPFTGRLKITKHEDNTISCSILCNNEGALFIHAEAKNISVSDILEPIYLPRVVYSIFPLGKVKNYEGTSQPLLAVQVTELTDGIFIGCTVNHVVADGNSIWHFINSWAEISKGALQISKTPSFERWFPKGIQLPIRFPFIVEPQNNISNDDNDEEESPNHSERMFHFTKENIAKLKFKANLEAGTKNISSLQAVFTHIWRSIIRCKNLDPQEKVNYMMVIGVRPRFIPPLEKNYFGNAVIDCEVTMKVCELLDNDGLGKGAWEMNKIIALYSDEKLKSRYENWLTTPSFARHGVVTNSNSLALGSSPWFDVYGNDFGWGKPVAVRNGGANKRNGKIYVCAGAEEGSMNFEVCLPYDILEAIGNDSEFMDAVSS 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06457 443 Gene3D - 3 204 IPR023213 -
Vivi3g06457 443 Gene3D - 211 432 IPR023213 -
Vivi3g06457 443 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 6 438 - -
Vivi3g06457 443 Pfam Transferase family 5 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06457 Vivi-Chr3 176860053 176861666 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06457 44 423 Monolignol Biosynthesis Gene Families AT5G48930 24.810 2.56e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06457 - - psat:127075665 533.872