Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06450 ATGGAAGAAGATCAAGAAGTGATTAAGCACGTTTGCAGAATCTGCTGCAAGAGTTTTCCTTGTGGTAGATCATTAGGTGGTCACATGAGGTCACATGATCATGATGATGATGGTGATGAGAGTTTTGTTGTTGTTTCTGCTTCAACAACAGTGAAGAAAGAAGAAGGTTGTTCTGAAGGGTATTATGGTCTTAGAGAGAATCCAAAGAAAACTTGGAGAGTACTCAATGATTCAGCTAGTGATGATCAAGAGGAAGCTTTTGATGTTGTTTTGGACAAATTGTGCAAGGAATGTGGTAGAGGGTTTCAGTCTTGGAAAGCTTTATTCGGTCACATGAAGTGTCATTCGAGTAGTAAGAACAATGGTTTCGAGTTGGATGAACAAGAGTCTAACACTGATGCTTCTGCTGCTGCTGTTCTTCCGAGTCGAAAGAGAAGATCGAAAAGACGGTTGAAAACTAGGTATGTAAATGGTAAGAGCTCTTCTTCTGTTGTGAATTTTGCTACGAATTCGGTCTCTGAGGAGGATGAACATGAACAAGAAGAGGTTGCTATGAGTTTGATGATGCTTAGTAGAGATGTAAGATCTTGGTCTGGTCTCAATTCTATTGCTGAATCTTCTGATAATAATGATAACAACTCTATGGAATTAGAAGTAGAAGCTCCATTAACTCATTTAGTTTCTTCGAATAAGTCCAAAGAGAAAAGCTTAGAAATTTTGGATGATGAATTGAAGATGAAGAAAACAAGAGTTTCTGTTAAGGATAAGATGAAGAATGAGGTTGATTCTGATTCAGCATTTGAGGTTAATGTAAGATCAAAACCAGGTACTACTAGCACTAGTAAAGGCAAGTATACTTCAATGAAGGAAAAGTTTTATGATTGTGAAAACAAGGTTTCATCGGAAGCTGAAATCGGCGCGAAAAAGTCTCGTAAGAAGGGAAAATTCGAGTGTGCTACTTGCAACCGAGTTTTTCATTCGTATCAAGCTCTTGGAGGTCATAGAGCTGGTCACAAGAGAAGCAAAGGATGTTTTGCTTTAAAGATTGATCAAAACAGTGAAAATGAAAGCAATGCTGAAGTAGATAAGAAGATCAATGTTTCTGATGAGGGAAGAGTCTTAGAAAAAGAAGACGTTGTCGATGAAATCAAAGAAGTTTCGGAAATAAGGAACTTCCTTGATCTTAATCTTCCTGCTGATGCAAGTATTGTTGATGAAAGAAATGGTCATTCTGAGATTTACACACCATGGTGGTTAGATGGAAGTAACTTCAAGCAAGAGTCAATGGTAGGTCTACTATCAAACTAG 1308 0.3777 MEEDQEVIKHVCRICCKSFPCGRSLGGHMRSHDHDDDGDESFVVVSASTTVKKEEGCSEGYYGLRENPKKTWRVLNDSASDDQEEAFDVVLDKLCKECGRGFQSWKALFGHMKCHSSSKNNGFELDEQESNTDASAAAVLPSRKRRSKRRLKTRYVNGKSSSSVVNFATNSVSEEDEHEQEEVAMSLMMLSRDVRSWSGLNSIAESSDNNDNNSMELEVEAPLTHLVSSNKSKEKSLEILDDELKMKKTRVSVKDKMKNEVDSDSAFEVNVRSKPGTTSTSKGKYTSMKEKFYDCENKVSSEAEIGAKKSRKKGKFECATCNRVFHSYQALGGHRAGHKRSKGCFALKIDQNSENESNAEVDKKINVSDEGRVLEKEDVVDEIKEVSEIRNFLDLNLPADASIVDERNGHSEIYTPWWLDGSNFKQESMVGLLSN 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06450 435 MobiDBLite consensus disorder prediction 125 152 - -
Vivi3g06450 435 Pfam C2H2-type zinc finger 10 32 - -
Vivi3g06450 435 Pfam C2H2-type zinc finger 316 340 - -
Vivi3g06450 435 Pfam C2H2-type zinc finger 95 117 - -
Vivi3g06450 435 ProSiteProfiles Zinc finger C2H2 type domain profile. 316 343 IPR013087 -
Vivi3g06450 435 SMART c2h2final6 316 338 IPR013087 -
Vivi3g06450 435 SMART c2h2final6 93 115 IPR013087 -
Vivi3g06450 435 SMART c2h2final6 10 32 IPR013087 -
Vivi3g06450 435 ProSiteProfiles Zinc finger C2H2 type domain profile. 10 37 IPR013087 -
Vivi3g06450 435 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 363 - -
Vivi3g06450 435 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
Vivi3g06450 435 ProSitePatterns Zinc finger C2H2 type domain signature. 12 34 IPR013087 -
Vivi3g06450 435 ProSitePatterns Zinc finger C2H2 type domain signature. 318 338 IPR013087 -
Vivi3g06450 435 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Vivi3g06450 435 Gene3D Classic Zinc Finger 1 120 - -
Vivi3g06450 435 SUPERFAMILY beta-beta-alpha zinc fingers 94 338 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06450 Vivi-Chr3 176634279 176636417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06450 9 258 C2H2 Transcription Factor Family AT1G26610 37.500 4.95e-33 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi3g06450 zf-C2H2_6 1.3e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06450 - - vvo:131632756 782.711