Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06445 ATGGAACTCACAGAAGAACAACTAAAACAAATCGAAGCAAATCGCCTTGCCGCATTAGCAAAACGCAAAGCTTTCTTAGAATCATCTTCACAACCTCAACGAAACCCTTGGCACCTCTTCAAATGCCAAAAAATCTCCCAACCCCAACCAATTCAACCCAAACCCCAATCCCAACCGGTTCAACCTAATCCCCAACCCGAACCGGATATCAAATTCCGCGCAAGACTCGAAGTTTGTTCCCCCGATTCCTTCACAATCACTCCTCTCCCTCTCCCCAATTCCCGTTTCCCAACCTTCGGTACTTGCTTCCAGATCCTCAACAACCTTCTCTCCCAAGTGGATGTGGATCCGTCGAATTTTACTCAGACGAGTGTGGACGGGAAAGCGTGTGTGCTGAAATTGGCGGACTACCGAACTGTTTTGAAGCAGTTGAAGGCGGGGATTGAGGTGGAGGAGATTCCTTGGAATACTTTTAATGTGGTTGAGAAGCTTTCTCATTCGGTGGGGAGGTGGAATCCGGTGAGGCCGGAGCATTTGAGTGATGAGGAGGTTGATGAGTTGATTAGGAAGTTGCCTAAGAGTTTAGTTGATGTTTTGTTGCCGTTTCAAATGGATGGTTTGAGGTTTGCGCTTAGAAGAGGGGGTAGATGTCTCATTGCTGATGAAATGGGACTTGGGAAGACATTGCAGGCTATTGCCATTGCAGGATGTTTCATGGATGAAGGAGCTATACTTGTTGTTTGCCCCGCTGTTTTGCGGTATTCATGGGCTGAAGAAATTGAGCGGTGGTTTCCTTCCTGCTTGCCTACGGATATTCATCTCGTTTTTGGCCACCAAGACAATCCTGTATATCTAACAAGATGCCCTAGAGTTGTGGTTATTTCTTATACCATGCTTCATCGTCTAAGGAAGAGCATGCTTGAGCGTAAGTGGGCTCTTATGATTGTTGATGAATCTCATCATGTACGTCCTTCAAAAAAAACCTCAGAACCCGGAGAGATAAAGGCTGTTCTTGACGTGGCTTCGGAAGTCAAGCGTATAATTTTGCTATCAGGGACACCTTCTTTGTCAAGACCGTTTGACATATTTCATCAGATAAATATGTTATGGCCGGGTTTGCTGGGGGTAACCAAATACGAGTTTGCAAAAACTTATTGTGATCTCAAATATATCAAGGGTGTCCAAGGAAAATATTTTGCGGATTATTCAAAGGGCACTCGCTTGGAGGAGTTGAACGTGTTACTAAAGCAAACTGTTATGATAAGGCGCCTCAAGGAACAAGTGTTGCAACAGTTACCTCCAAAACGCAGGCAAATTATTAGAATGTCGCTGAAGAGATCAGATATAGTTTCTGCGAAAACAGCAGTTGGGGCATTGAAAGCTGATGACTCTGAAAATGCTAGTGAAGATGTGCATTTGGAAAGTTTTGAAGAACATGATGGGAAGCTTACTAATCAAGAACTTGGAATTGCAAAGCTATCTGGGTTTTGTGAATGGCTTTCCTTCCATCCACTCATTGCAGGATTAGATAATGCTCCAAAGATGATAATTTTTGCTCATCACCACAAAGTTCTTGACGGAGTACAGGAGTTTATATGTGAGAAAGGAGTAGGTTTTGTGCGAATAGATGGACTTACACTACCCAAAGATAGACAGTCTGCAGTAATCTCATTTCGATCATCACCAGAGGTTAAAATTGCGATAATAGGTGTTCTAGCAGCAGGTTTTGGAGTTGATTTCTCAACTGCACAGGATGTTGTCTTTTTGGAGCTACCTCAGTGCCCAACAGTGATGCTACAGGCTGAGGACAGAGCTCATCGACGAGGGCAAACAAATGCAGTTAACATATACATATTCTGTGCAAAGGATACTTCAGATGAATCACATTGGAAATATTTGAACAAAAGCTTACATCGTGTTTCATCTACGACAGATGGCAAATATGATGCCGTGAAGGAGATAGAGGTTGAAGGTGTTTCTTATTTAGATCCGTCCTTGAAAATTGACAGACCTAAAAAAAAATCTACATCTAAAGATGCATCAGCTGAAACACATTTGGATGGGCAACCCTCTGTAGTGAAGTCAAATGAAACAGAAGCAAATCAAGAAGATGAATCTGGTCTTGCAAACAACATAAATCAGGATGCTAATATTATGGTTGATAGTGTTTCCTTCCTAGATTTATGCAACGCTTCAGTTTTGGATGGAAATCTTGATGTAGATGCTTCTAATGCTGAGGATAGATGTTCTGAAAAGAGTTCCGAGGACAAAGATAAAGTAATAGAGGATAAGAAATCAACTTTCATAAAAGATGCAGATGATGACCAGCCCTCTCATCCTGTTGAAGCTGAAGTAAAACGCTCTCATCAAGTGAATTCTCTGCGGTTTGAGGTGAGCCCATACACCGGAAGGATCCACCTCTATACTTGCATTTTGGGTAAAGATGCAAGACCACAGCCACTTTATGAAAATTTCCGACCAGAAGACCTTGAGCTGCTGAGTCCTGCCGATGATGATGATGATGAGAAAAAAGGTATAGAGTCTGCATCTGTCAAAGATAACCCTGTGTATAGGAATGCTCTTCTGGATTTTGCCAATGAGTGGAAGAGTTTGAGACCAATTGAACGTAATAAGTTACTTGGAAAACCATTACAACTTCCTTTGGCTGTCGAACTGTGCTGCTTAAATGAAAGTAATAGCCACAACAAGAAGGGATTGATAAATGGTGGAAGCAAACGTCGCATGACTCCTTTAGTCGACATCAGCTATCCCTTACCATCAGATGCTGTTTGGAAACAGGTTTGTCTTCGAAGCGGTTGTGGTAAGAAGGAAAAAGAATACACTCAAGGCTGGAGTCCGAAAGATGGGCCTCTTTGTAAGCTTTGTCAAAATCAATGCATGGGTAATAATGCCAAGACACCTGAATATTTTGAAGATCTTTTTTGTAACCTTGTCTGCTATCAAGAGTATCGCATGAGAACTAGCAACAGATTCATCCGTCAGGAACTTTTTAATATTGAGCAAGGTGTATGCACAAATTGCCAATTGGACTGTCATAAGCTTGTTGTGATCATAAGACCTTTGTCCTTGGAAAAACGACGGGAGTACATTGAAAAATCCGCACCAAATATTGCAAAGCGGAGGAAGCTGCTTGAGAAGCTTGCCAAAGATCCAATTGAAGGAAATGCATGGCATGCTGATCACATTGTTCCAGTATATAAAGGAGGAGGTGAATGCAAACTTGAGAATTTGAGAACTCTTTGTGTGGCCTGCCATCATAATGTTACTGCTGAACAATGTGCTGAACGACGAATTATAAGAGCAGAAGCCCGGAAACAACTAAAAGCATTGATGGATACCATGAAAAATAATATGAAGGGTGCTGCTGGCACTAATATTGAGGACCAACTGCTTCACGGGGAGCAAGAAATTATGCATGAGGATGATATTTTAGTCGAGGTTCCTGGAAGTGCCTATGCGCTCGCAAATTGTCAAGAAAGCGGAGATGCAGCCTGTTAA 3519 0.4223 MELTEEQLKQIEANRLAALAKRKAFLESSSQPQRNPWHLFKCQKISQPQPIQPKPQSQPVQPNPQPEPDIKFRARLEVCSPDSFTITPLPLPNSRFPTFGTCFQILNNLLSQVDVDPSNFTQTSVDGKACVLKLADYRTVLKQLKAGIEVEEIPWNTFNVVEKLSHSVGRWNPVRPEHLSDEEVDELIRKLPKSLVDVLLPFQMDGLRFALRRGGRCLIADEMGLGKTLQAIAIAGCFMDEGAILVVCPAVLRYSWAEEIERWFPSCLPTDIHLVFGHQDNPVYLTRCPRVVVISYTMLHRLRKSMLERKWALMIVDESHHVRPSKKTSEPGEIKAVLDVASEVKRIILLSGTPSLSRPFDIFHQINMLWPGLLGVTKYEFAKTYCDLKYIKGVQGKYFADYSKGTRLEELNVLLKQTVMIRRLKEQVLQQLPPKRRQIIRMSLKRSDIVSAKTAVGALKADDSENASEDVHLESFEEHDGKLTNQELGIAKLSGFCEWLSFHPLIAGLDNAPKMIIFAHHHKVLDGVQEFICEKGVGFVRIDGLTLPKDRQSAVISFRSSPEVKIAIIGVLAAGFGVDFSTAQDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNIYIFCAKDTSDESHWKYLNKSLHRVSSTTDGKYDAVKEIEVEGVSYLDPSLKIDRPKKKSTSKDASAETHLDGQPSVVKSNETEANQEDESGLANNINQDANIMVDSVSFLDLCNASVLDGNLDVDASNAEDRCSEKSSEDKDKVIEDKKSTFIKDADDDQPSHPVEAEVKRSHQVNSLRFEVSPYTGRIHLYTCILGKDARPQPLYENFRPEDLELLSPADDDDDEKKGIESASVKDNPVYRNALLDFANEWKSLRPIERNKLLGKPLQLPLAVELCCLNESNSHNKKGLINGGSKRRMTPLVDISYPLPSDAVWKQVCLRSGCGKKEKEYTQGWSPKDGPLCKLCQNQCMGNNAKTPEYFEDLFCNLVCYQEYRMRTSNRFIRQELFNIEQGVCTNCQLDCHKLVVIIRPLSLEKRREYIEKSAPNIAKRRKLLEKLAKDPIEGNAWHADHIVPVYKGGGECKLENLRTLCVACHHNVTAEQCAERRIIRAEARKQLKALMDTMKNNMKGAAGTNIEDQLLHGEQEIMHEDDILVEVPGSAYALANCQESGDAAC 1172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06445 1172 Gene3D - 421 717 IPR027417 -
Vivi3g06445 1172 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 504 655 IPR001650 -
Vivi3g06445 1172 CDD HNHc 1046 1096 IPR003615 -
Vivi3g06445 1172 Coils Coil 1 21 - -
Vivi3g06445 1172 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 423 IPR027417 -
Vivi3g06445 1172 Gene3D - 175 420 IPR038718 -
Vivi3g06445 1172 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 1113 - -
Vivi3g06445 1172 FunFam SNF2 DNA repair protein, putative 173 422 - -
Vivi3g06445 1172 Gene3D - 987 1123 - -
Vivi3g06445 1172 MobiDBLite consensus disorder prediction 744 779 - -
Vivi3g06445 1172 MobiDBLite consensus disorder prediction 48 68 - -
Vivi3g06445 1172 SMART HNH_5 1045 1093 IPR003615 -
Vivi3g06445 1172 CDD DEXHc_HARP_SMARCAL1 199 423 - -
Vivi3g06445 1172 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 208 372 IPR014001 -
Vivi3g06445 1172 Pfam HNH endonuclease 1058 1097 IPR002711 GO:0003676|GO:0004519|GO:0008270
Vivi3g06445 1172 Pfam SNF2-related domain 217 454 IPR000330 GO:0005524|GO:0140658
Vivi3g06445 1172 SMART ultradead3 195 391 IPR014001 -
Vivi3g06445 1172 MobiDBLite consensus disorder prediction 682 710 - -
Vivi3g06445 1172 CDD SF2_C_SNF 514 620 - -
Vivi3g06445 1172 MobiDBLite consensus disorder prediction 670 710 - -
Vivi3g06445 1172 Pfam Helicase conserved C-terminal domain 511 609 IPR001650 -
Vivi3g06445 1172 MobiDBLite consensus disorder prediction 52 66 - -
Vivi3g06445 1172 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 309 660 IPR027417 -
Vivi3g06445 1172 SMART helicmild6 526 609 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06445 Vivi-Chr3 176282914 176304047 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06445 514 662 RAD5 or RAD16-like Gene Family AT1G11100 33.553 2.53e-14 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi3g06445 SNF2_N 7.9e-26 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06445 K25861 - gmx:100788690 1647.48