Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06425 ATGGGTTGTGCGAAGTCGAAGGAAAGGAGAGTGACTGAGTTAGGGCGAACGAGTCGGAATGAGTCATTGAGTTTTAGGTTTGGGAAATTGGATAAGTATGTTCAACGTCAACTCGTGGCGGTTGGTTGGCCGAAGTGGCTTGTTGCTGCGGCTGGTGAAGCTGTTCGCGGTTGGATTCCACTACGCGAAGATAACTTTCAGATTATGGAAAAGATTGGAGAGGGTACATATAGCAAAGTATTTAAGGCGAGGGACCTTAAGACAGGGAAATTAGTAGCACTGAAGAAGGTGAGGTTTAACAGTTTAGACAGGAAAAGTGTAAAGTTCGCGGCAAGGGAGATAGTGATTTTGAGAAAGCTTGATCATCCCAATATCACGAAGCTTCAAGGGTTGATTACTCCTAGATTATCTAGTACCTTATACCTCGTGTTTGAGTACATGGAACATGACTTTGCAGGTCTATTGGGCAATCCTAATATCAACTTCAGTCAACCACAGATTAAGTGCTACATGAAGCAATTGTTATCTGCTGTTGAATACTTTCACTTGCATGGTGTGATGCACCGAGACATCAAAGGGTCAAATCTTCTTGTCAACAATGAAGGAACGTTGAAAGTTGCCGATTTTGGATTGGCAAACTTCATTACATCGGAGCGAAAGAAGGCCCAAACCAATCATGTTGTCACATTATGGTATCGTCCACCGGAACTTTTACTTGGTTCGACAAATTATGGTTCTTCTGTGGATCTCTGGAGTGTTGGCTGCGTCTTTGGAGAGCTTCTCCTTAGGAAGGTTATATTTCAAGGGAATTCTGAGCAGGACCAACTAAACAAAATTTTCAAACTTTGTGGCAACCCACCTACTGAATTCTGGAATAGGACTAAACCTCCTTTTGAAACTTTGAGGCCACAACTACCATGTGATGGTTGTTTCCAAGATTCTTTTAAAGATCTGCCTCCAACCAGTGTAAATTTGCTACAAACTCTTCTATCTATTGAACCTGACAAACGCGGGACTGCCGCATCAGCTCTCTCGTCAGAGTATTTCAAAACACTACCTTATGCTTGTGAACCATCAAGCTTGCCGAAATACCCTCCTAGCAAGGAAATTCACGCAAAGAAAAGGGCGGAGGAGTTAAGGAAAAGGAAGGATAGACAAGTTCGTCGAACTGAAACAATGAAACAATCAAGAAAGCCGCTAGAATTCCCAGCAGAGGGTTCGGCATTTCAAACTCAGAATTCGCACAGGGTCCGTAGTAGATCTCTCCAAATCATTAAAGAAGAGAAGGCATCTCAAGGAAACATTTTCTATTCTGGCCCATTACAAGTTTCAACATCAAATGCATTTGCTTGGGCAAAGAACCAAAAAGACAATACTTCAATTCGATTAGATTGTCGAACTACTTCTAGAAGACACAGTTTCAATGCCTTGGATTCTTCCGTATTTAACTCAAGGAATAAATTGGACACAGTAACCCAAGAAAAGAAAGAGTTTTGCCGTGGAAACACCAAATGTAGAGGCCTTGAGCTACTTGAAATTTATAAGGCTTCAAAGGATAATCATTGGAGTAGGTTTGATCGTCAAAACTCATTTGATACTTCTGATGAGTACACCTCGCGAGAATTGCCGACGGTGCTTTCTGAGGGAGAAGATCCTTTGTCCAAAAGAAGTAATTTGAGTTATCCGTATCAAAGAGGAAAAGTTGAATTTTCAGAGTCTCTAATGTCTCAATTAGACACGGTTGACTGA 1749 0.4162 MGCAKSKERRVTELGRTSRNESLSFRFGKLDKYVQRQLVAVGWPKWLVAAAGEAVRGWIPLREDNFQIMEKIGEGTYSKVFKARDLKTGKLVALKKVRFNSLDRKSVKFAAREIVILRKLDHPNITKLQGLITPRLSSTLYLVFEYMEHDFAGLLGNPNINFSQPQIKCYMKQLLSAVEYFHLHGVMHRDIKGSNLLVNNEGTLKVADFGLANFITSERKKAQTNHVVTLWYRPPELLLGSTNYGSSVDLWSVGCVFGELLLRKVIFQGNSEQDQLNKIFKLCGNPPTEFWNRTKPPFETLRPQLPCDGCFQDSFKDLPPTSVNLLQTLLSIEPDKRGTAASALSSEYFKTLPYACEPSSLPKYPPSKEIHAKKRAEELRKRKDRQVRRTETMKQSRKPLEFPAEGSAFQTQNSHRVRSRSLQIIKEEKASQGNIFYSGPLQVSTSNAFAWAKNQKDNTSIRLDCRTTSRRHSFNALDSSVFNSRNKLDTVTQEKKEFCRGNTKCRGLELLEIYKASKDNHWSRFDRQNSFDTSDEYTSRELPTVLSEGEDPLSKRSNLSYPYQRGKVEFSESLMSQLDTVD 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06425 582 PANTHER CELL DIVISION PROTEIN KINASE 64 355 - -
Vivi3g06425 582 MobiDBLite consensus disorder prediction 367 398 - -
Vivi3g06425 582 Pfam Protein kinase domain 66 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g06425 582 CDD STKc_CDK9_like 66 349 - -
Vivi3g06425 582 ProSiteProfiles Protein kinase domain profile. 66 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g06425 582 SMART serkin_6 66 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g06425 582 Gene3D Transferase(Phosphotransferase) domain 1 149 389 - -
Vivi3g06425 582 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Vivi3g06425 582 MobiDBLite consensus disorder prediction 363 398 - -
Vivi3g06425 582 Coils Coil 373 393 - -
Vivi3g06425 582 FunFam probable serine/threonine-protein kinase At1g54610 53 148 - -
Vivi3g06425 582 ProSitePatterns Protein kinases ATP-binding region signature. 72 95 IPR017441 GO:0005524
Vivi3g06425 582 MobiDBLite consensus disorder prediction 534 558 - -
Vivi3g06425 582 FunFam CMGC/CDK/CRK7 protein kinase, variant 149 387 - -
Vivi3g06425 582 Gene3D Phosphorylase Kinase; domain 1 54 148 - -
Vivi3g06425 582 SUPERFAMILY Protein kinase-like (PK-like) 61 355 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06425 Vivi-Chr3 175193307 175199926 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06425 64 455 Core Cell Cycle Gene Families AT5G10270 40.482 6.19e-101 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vivi3g06425 Pkinase 1.2e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06425 - - vvo:131662597 1169.84