Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06424 ATGGGTTGTGCGAAGTCGAAGGAAAGGAGAGTGACTGAGTTAGGGCGAACGAGTCGGAATGAGTCATTGAGTTTTAGGTTTGGGAAATTGGATAAGTATGTTCAACGTCAACTCGTGGCGGTTGGTTGGCCGAAGTGGCTTGTTGCTGCGGCTGGTGAAGCTGTTCGCGGTTGGATTCCACTACGCGAAGATAACTTTCAGATTATGGAAAAGATTGGAGAGGGTACATATAGCAAAGTATTTAAGGCGAGGGACCTTAAGACAGGGAAATTAGTAGCACTGAAGAAGGTGAGGTTTAACAGTTTAGACAGGAAAAGTGTAAAGTTCGCGGCAAGGGAGATAGTGATTTTGAGAAAGCTTGATCATCCCAATATCACGAAGCTTCAAGGGTTGATTACTCCTAGATTATCTAGTACCTTATACCTCGTGTTTGAGTACATGGAACATGACTTTGCAGGTCTATTGGGCAATCCTAATATCAACTTCAGTCAACCACAGATTAAGTGCTACATGAAGCAATTGTTATCTGCTGTTGAATACTTTCACTTGCATGGTGTGATGCACCGAGACATCAAAGGGTCAAATCTTCTTGTCAACAATGAAGGAACGTTGAAAGTTGCCGATTTTGGATTGGCAAACTTCATTACATCGGAGCGAAAGAAGGCCCAAACCAATCATGTTGTCACATTATGGTATCGTCCACCGGAACTTTTACTTGGTTCGACAAATTATGGTTCTTCTGTGGATCTCTGGAGTGTTGGCTGCGTCTTTGGAGAGCTTCTCCTTAGGAAGGTTATATTTCAAGGGAATTCTGAGGACCAACTAAACAAAATTTTCAAACTTTGTGGCAACCCACCTACTGAATTCTGGAATAGGACTAAACCTCCTTTTGAAACTTTGAGGCCACAACTACCATGTGATGGTTGTTTCCAAGATTCTTTTAAAGATCTGCCTCCAACCAGTGTAAATTTGCTACAAACTCTTCTATCTATTGAACCTGACAAACGCGGGACTGCCGCATCAGCTCTCTCGTCAGAGTATTTCAAAACACTACCTTATGCTTGTGAACCATCAAGCTTGCCGAAATACCCTCCTAGCAAGGAAATTCACGCAAAGAAAAGGGCGGAGGAGTTAAGGAAAAGGAAGGATAGACAAGTTCGTCGAACTGAAACAATGAAACAATCAAGAAAGCCGCTAGAATTCCCAGCAGAGGGTTCGGCATTTCAAACTCAGAATTCGCACAGGGTCCGTAGTAGATCTCTCCAAATCATTAAAGAAGAGAAGGCATCTCAAGGAAACATTTTCTATTCTGGCCCATTACAAGTTTCAACATCAAATGCATTTGCTTGGGCAAAGAACCAAAAAGACAATACTTCAATTCGATTAGATTGTCGAACTACTTCTAGAAGACACAGTTTCAATGCCTTGGATTCTTCCGTATTTAACTCAAGGAATAAATTGGACACAGTAACCCAAGAAAAGAAAGAGTTTTGCCGTGGAAACACCAAATGTAGAGGCCTTGAGCTACTTGAAATTTATAAGGCTTCAAAGGATAATCATTGGAGTAGGTTTGATCGTCAAAACTCATTTGATACTTCTGATGAGTACACCTCGCGAGAATTGCCGACGGTGCTTTCTGAGGGAGAAGATCCTTTGTCCAAAAGAAGTAATTTGAGTTATCCGTATCAAAGAGGAAAAGTTGAATTTTCAGAGTCTCTAATGTCTCAATTAGACACGGTTGACTGA 1746 0.4158 MGCAKSKERRVTELGRTSRNESLSFRFGKLDKYVQRQLVAVGWPKWLVAAAGEAVRGWIPLREDNFQIMEKIGEGTYSKVFKARDLKTGKLVALKKVRFNSLDRKSVKFAAREIVILRKLDHPNITKLQGLITPRLSSTLYLVFEYMEHDFAGLLGNPNINFSQPQIKCYMKQLLSAVEYFHLHGVMHRDIKGSNLLVNNEGTLKVADFGLANFITSERKKAQTNHVVTLWYRPPELLLGSTNYGSSVDLWSVGCVFGELLLRKVIFQGNSEDQLNKIFKLCGNPPTEFWNRTKPPFETLRPQLPCDGCFQDSFKDLPPTSVNLLQTLLSIEPDKRGTAASALSSEYFKTLPYACEPSSLPKYPPSKEIHAKKRAEELRKRKDRQVRRTETMKQSRKPLEFPAEGSAFQTQNSHRVRSRSLQIIKEEKASQGNIFYSGPLQVSTSNAFAWAKNQKDNTSIRLDCRTTSRRHSFNALDSSVFNSRNKLDTVTQEKKEFCRGNTKCRGLELLEIYKASKDNHWSRFDRQNSFDTSDEYTSRELPTVLSEGEDPLSKRSNLSYPYQRGKVEFSESLMSQLDTVD 581
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06424 581 MobiDBLite consensus disorder prediction 533 557 - -
Vivi3g06424 581 MobiDBLite consensus disorder prediction 362 397 - -
Vivi3g06424 581 CDD STKc_CDK9_like 66 348 - -
Vivi3g06424 581 Gene3D Transferase(Phosphotransferase) domain 1 149 388 - -
Vivi3g06424 581 FunFam CMGC/CDK/CRK7 protein kinase, variant 149 386 - -
Vivi3g06424 581 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Vivi3g06424 581 PANTHER CELL DIVISION PROTEIN KINASE 64 354 - -
Vivi3g06424 581 SMART serkin_6 66 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g06424 581 FunFam probable serine/threonine-protein kinase At1g54610 53 148 - -
Vivi3g06424 581 ProSitePatterns Protein kinases ATP-binding region signature. 72 95 IPR017441 GO:0005524
Vivi3g06424 581 SUPERFAMILY Protein kinase-like (PK-like) 61 354 IPR011009 -
Vivi3g06424 581 ProSiteProfiles Protein kinase domain profile. 66 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g06424 581 Gene3D Phosphorylase Kinase; domain 1 54 148 - -
Vivi3g06424 581 Pfam Protein kinase domain 66 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g06424 581 Coils Coil 372 392 - -
Vivi3g06424 581 MobiDBLite consensus disorder prediction 366 397 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vivi3g06424 Vivi-Chr3 175193303 175199926 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06424 64 454 Core Cell Cycle Gene Families AT5G10270 40.241 1.02e-98 308
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vivi3g06424 Pkinase 5.2e-65 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06424 - - vvo:131662597 1163.29