Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06416 ATGGCGCTGTTCCGAAGATTATTTTACCGGAAGCCGCCGGATCGTCTTCTCGAGATCTCTGAGAGAGTCTATGTTTTTGATTGCTGCTTCTCTACGGGCGTCTTGGAAGAAGATGAGTACAAATTGTATATGGGGGGAATTGTAGCTCAGCTACAAGATTACTTTCCAGATGCTTCTTTCATGGTGTTCAATTTCAGAGAAGGGGATAGGCGCAGCCAAATTTCAGACATATTATCTTTATGTGACATGACAGTTATGGAGTACCCTCGGCAATACGAGGGCTGTCCACTTCTTCCTCTAGAGATGGTTCATCATTTCCTTCGATCAAGTGAAAGCTGGCTGTCTTTGGAGGGGCAACAAAATGTGCTTTTGATGCACTGTGAAAGAGGGGGTTGGCCTGTGCTGGCATTTATGTTAGCCGGTCTTTTATTGTACCGAAAACAATATAGTGGGGAGCTGAAGACTCTTGAAATGGTCTACAAGCAAGCACCCAGAGAACTTCTCCAGCTTTTATCTCCTTTGAACCCACAGCCTTCTCAGTTAAGATATCTTCATTATATTTCCAGGAGAGATTTGGGTTCTGAGTGGCCTCCTTCAGACACACCTTTATATTTAGATTGTGTAATTCTAAGAGATCTTCCATTATTTGATGGTGGGAAAGGTTGCAGGCCTGTTGTAAATGTTTATGGTCCGGACCCTTCAAATCCTGCCAATAGAAGTTCTAAGCTTCTTTTCTCAACTTCAAAAGTCCAAAATCATGTTCGCCACTACCCGCAGGCAGAGTGTATGCTCGTGAAAATTGATATTCGTTGTCGTGTTCAAGGGGATGTCGTTCTTGAATGCGTACATTTAAACGAAGATTTCCTTAGTGAGGAGATGATGTTTAGAGTGATGTTTCATACTGCATTTATACGGTCAAATATTTTGGTGCTGAGCCGTGATGAAATCGATATATTGTGGGATACAAAGGATCAGTTCCCCAAGGATTTTAAATCTGAGGTGCTTTTTTTGGATGCTGATGCTGTTATACCTAATCTAACCACAGTCAATGTGAGTGAAGAAGATGAAAATGAGACAGAAAGCGGTTCCCCTGAGGAATTCTACGAAGTGGAAGAGATTTTCAGCAATGTAGTTGATATACAGGATTCTCCAAAGTTTCGTCAAAATGCAGTAGATGTCTGGAAAGAGTATTCAGATCCTCCTACCTTTCAGGATTCTACGCAAGATGACGGGATTAACCAACAGGTTGAATGGACAGATTCTGTTATTAATGAGGTGAAAGACATCACGGTTGATGATGTGAAATACAAGCTTGATGAGCGTGTAGATTCAGATACTCATGCAGTGAAAGATATTGCTGTGGATGGTGGAGAAAATAAGTTAACTTCCACTGCTGTTACTTTTGATATGACGGAAACTCCGGAGAGACAGGAAGTCACTTTGAATGTGCATGATGAGTTAGCAGTTACGCGAAACAATTATGATGAAGACAATGATGCAACACTTAAAGAATTAGAGCCTGAGGAAGGGCAGCAGACGCATGATCTTGCCGGATCAATATCTGGTGAAAAGAAACAACTTTCTTCAGACTCAAAGCCAGTGGGAGACGTAGTTGCAGAAAAGCAAAAGGCTAAACAGAAAGAACCACGGGGATTTCAGGAAAAACAGGCAAAAGAAAATGCAACAACTAGGTGGATACCTTCTAACAAAGGTTCTTATCAAGATTCAATGCATGTTTCATATCCACCGATAAGGCATAATAGTTTACCACCTGTTTTGTCAAATGCTACCTCTGCGAAGGAGAAAATGACTAATGCCAAAGGAAGACGTATTTCTAGTTCTCGTTCGACAAATGATCTGAAAAGTTGTAATGGGGACAATTCAAAATCTCTAGAAAGCATATGGGAAACTGATTCAAACGCCCAGCTGTCACCATTGACACCAATTACAGAGTCATCTCATCAGTCAGCTACTCAAGCACCACAGTTGAGCTCTGATCAAGTGCTACAACCTCATCTCCCCCCTTTCCCTCCACCCCCACCTCCACCCACATCACCATCTTCTTCCTTGGATGGTAAAGTGTCTACGATACCACAACCGCCGCCTCAACCGCCTCCTCAACCACCAGCACCACCTCCACCTTTTTTGTCAGGTTTTGGCAAGAAAAATGAAGAGATGGACTTACAAACTGCAACTCATCCTCCTCCACCCCCACCTCCGTCTTCATTTTCTGCGCAAAATAGAGGGAGCTCATTACCTCTTTCTACTCACAGGAAGCCCTATTATTCATCAATTGGCATGGTTGGAGAAAATGGTGGTGCTTTACCTCCTTCAATAGGAAGTGTTTTTGCATCAAAAGTTTATAAATTAGTTGATGGAGTCTCTCTTCCCATTCCTCCTCCCCCACCACCTCCACCCCCTTCTTCTCTCCCCCCAAATTATGGAGTTAGATCCATTCCTCCTCCACCACCTCCCCCACCTTCTTTGTCTTATATGGATAGAGCTCCACCACTCCTTCCTCCTATAACACCAACATCACTTAATGCTCCACTACCACCACCTTTAAGTAAATCTCAACCTCCACCTCCACCACCATTGCCGCTTACTCCTTCTTTTTGTAAAGCTCCATCAACCCCACTTGCTATTAGTATAGCTCCACTGCCTCCACCTCTACCTCATTTGAGTGGAGCACGACCTCCACCTCTTCCTTCAACAAGTAAAACACAACCTCCGCCACCACCACCTCTTCCTTCATCAAGTGAAGAACATCCACCACCACCACCACCGCCTCCTTCAATGTCTAACATCCCACCACCCCCACCCCCACCCATACCACCACCACCACCACTTTCTCTATCTTGTAGAGCATCTCTACCACCACCTCTTCCTTCAATTTCTAAGGGCCCCCTACCCCCACCCCCTCCTCCACCATTCTTTGGAACTCCACCATCATCATTTCATCCTAGATCAAGTAGAGCACCTTCACCACCACCTCCTTTGTCCAAGGATCCACCATTCTATAGAGCTCCACCCCCACCCCCACCCCCACCATTCTATGGAACTCCACCACCACCACCACCACCACCACCTCTTTTTTCATCAAGTGGAGTACCTCCAACACCATCTCCTTCATTGCCTAAGGCCCCACCACCCCCACCACCACCACCATATCTTCCTACATTAAGTAGTGAAATACCTCCAACACCACCAACTCTTGCAATGTCTAAGGCCCCACCTTCAGCACTCAATAGAGCTCCACCACCACCACCACCACCACCATATCTTCCTGCATCTAATGGAGCACCTCAACCACCACCACCACCTCCTTCAATGTCTAAGACCCCACCACCACCACCTCCACCATTCTATGGGGCTCCACCAACCCCACCACCACCACCATATCTTCCTGCATCTAGTGGAGCACCATCGCCACCACCACCACCATATCTTCCTACAACTAGTGGAGCACCACCTCCTCCACCTCCCCCTTTTTATGGAGCAACACCACCACCACCACCACCACCTCATTCATTGTCTATGGCCCCACCACCCCCACCTCCACCATTCTATGGAGCTCCACCACCGCCACCACCTCCAATGCATGCAACACAGGCACCACCTCCTCCACCACCTCCGGGGGGTCGAGGCCCACCTCCTCCTCCACCTCCAGGTTTTCGAGGCCCACCTCCTCCGCCACCTCCAGGTTTTCGAGGCCCACCTCCTCCGCCACTTCCAGGTGGCCACGGCCCACCTCCTCCTCCACCTCCAGGTGGTCGAGGCCCTGCTCCACCACCGCCTCCTGGAGGTCATGCACCTGGTGCTCCCGCACCTCCTAGACTTCCAGGTGGTGCACCCCCACCACCCGGGGCTGATCCAAGAGGTAGAGGGCGTGGACTTGCTCGTCCTACTGGTGCAGCGGCACCTCGGCGATCCTCCTTAAAGCCTCTTCATTGGAGTAAGGTAACAAGGGCATTGCAAGGAAGTTTATGGGAAGAATTACAAAGACATGGAGAAACTCAAATTGGACAAGAGTTTGACGTTTCAGAGTTAGAGAAGCTTTTTGCTGTAAATGTTCCAAAACCTGCTGCTGCTGGTGGTAAATCTGGAGGGCTAGGCAAATCCGCAGGATCCAAACCTGAGAAAATTACCTTGGTTGATTTAAGGAGAGCCTATAATACTGAAATAATGCTTACAAAGGTTAAGATGCCTCTACCGGATATGATGGCTGCAGTTCTGGCTTTGGATGACACAGTATTAGATGTTGATCAGGTGGAAAATCTTATTAAATTTTGCCCTACCAAAGAGGAAATGGATCTTTTGAAGGCATATACTGGCAACAAGGAGAATTTGGGAAAGTGCGAACAGTTCTTTATGGAGCTGATGAAAGTGCCACGAGTTGAGTCGAAATTAAGAGTATTCTGTTTCAAGATTCAATTTCAGTGTCAGATTACAGAGTTTAATAAGAGTTTAAACTTAGTGAACTCTGCATGTGAAGAGGTCCGAAATTCAGTCAAACTGAAGGAGATTATGAAGAAAATTCTTTATTTGGGTAATGCATTGAATCAAGGAACAGCAAGAGGAGCTGCTGTTGGATTTAAGTTAGATAGCCTTTTAAAGCTCACCGATACTCGTGCTTCTAACAGCAAAATGACACTGATGCATTATCTTTGCAAGGTCCTAGCTGAAAAGTCTCCTACACTCCTTGATTTTCACCTCGACCTAGTTAGCGTAGATACTGCCTCTAAGATACAATTGAAGTCATTAGCAGAAGAAATGCAGGCAATTACCAAGGGACTAGAAAAAGTAAACCAGGAGCTTGCTGCTTCTGAAAGTGATGGCCCAGTATCTGAAGTTTTCCGTAAGACATTGAAAGATTTCGTTAATGAAGCCAAGTCTCAGGTGGATTCTGTAACACGCCTATATTCTGATGTGGGTAGAAATGCAGACGCACTTGCACAGTATTTCAATGAGGATCCCGCCCGTTGTCCTTTTGAGCAAGTTACTGCAACTCTCTTAAATTTTATAAGGATGTTTCTCAAAGCACATGATGATAATATCAAACAAGCAGAATTAGAGAAGAAGAAAGCTGAGAAAGAGGCCGAAATAGAAAAGAAGGCTAAGAAGGAGGCTGAAATGGAAAAGGGTAAAGGCAGTGGTTTGACAAGGAAGAGTAAAAAAGATAACGAAGAAGAAAGCTGA 5199 0.458 MALFRRLFYRKPPDRLLEISERVYVFDCCFSTGVLEEDEYKLYMGGIVAQLQDYFPDASFMVFNFREGDRRSQISDILSLCDMTVMEYPRQYEGCPLLPLEMVHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYSGELKTLEMVYKQAPRELLQLLSPLNPQPSQLRYLHYISRRDLGSEWPPSDTPLYLDCVILRDLPLFDGGKGCRPVVNVYGPDPSNPANRSSKLLFSTSKVQNHVRHYPQAECMLVKIDIRCRVQGDVVLECVHLNEDFLSEEMMFRVMFHTAFIRSNILVLSRDEIDILWDTKDQFPKDFKSEVLFLDADAVIPNLTTVNVSEEDENETESGSPEEFYEVEEIFSNVVDIQDSPKFRQNAVDVWKEYSDPPTFQDSTQDDGINQQVEWTDSVINEVKDITVDDVKYKLDERVDSDTHAVKDIAVDGGENKLTSTAVTFDMTETPERQEVTLNVHDELAVTRNNYDEDNDATLKELEPEEGQQTHDLAGSISGEKKQLSSDSKPVGDVVAEKQKAKQKEPRGFQEKQAKENATTRWIPSNKGSYQDSMHVSYPPIRHNSLPPVLSNATSAKEKMTNAKGRRISSSRSTNDLKSCNGDNSKSLESIWETDSNAQLSPLTPITESSHQSATQAPQLSSDQVLQPHLPPFPPPPPPPTSPSSSLDGKVSTIPQPPPQPPPQPPAPPPPFLSGFGKKNEEMDLQTATHPPPPPPPSSFSAQNRGSSLPLSTHRKPYYSSIGMVGENGGALPPSIGSVFASKVYKLVDGVSLPIPPPPPPPPPSSLPPNYGVRSIPPPPPPPPSLSYMDRAPPLLPPITPTSLNAPLPPPLSKSQPPPPPPLPLTPSFCKAPSTPLAISIAPLPPPLPHLSGARPPPLPSTSKTQPPPPPPLPSSSEEHPPPPPPPPSMSNIPPPPPPPIPPPPPLSLSCRASLPPPLPSISKGPLPPPPPPPFFGTPPSSFHPRSSRAPSPPPPLSKDPPFYRAPPPPPPPPFYGTPPPPPPPPPLFSSSGVPPTPSPSLPKAPPPPPPPPYLPTLSSEIPPTPPTLAMSKAPPSALNRAPPPPPPPPYLPASNGAPQPPPPPPSMSKTPPPPPPPFYGAPPTPPPPPYLPASSGAPSPPPPPYLPTTSGAPPPPPPPFYGATPPPPPPPHSLSMAPPPPPPPFYGAPPPPPPPMHATQAPPPPPPPGGRGPPPPPPPGFRGPPPPPPPGFRGPPPPPLPGGHGPPPPPPPGGRGPAPPPPPGGHAPGAPAPPRLPGGAPPPPGADPRGRGRGLARPTGAAAPRRSSLKPLHWSKVTRALQGSLWEELQRHGETQIGQEFDVSELEKLFAVNVPKPAAAGGKSGGLGKSAGSKPEKITLVDLRRAYNTEIMLTKVKMPLPDMMAAVLALDDTVLDVDQVENLIKFCPTKEEMDLLKAYTGNKENLGKCEQFFMELMKVPRVESKLRVFCFKIQFQCQITEFNKSLNLVNSACEEVRNSVKLKEIMKKILYLGNALNQGTARGAAVGFKLDSLLKLTDTRASNSKMTLMHYLCKVLAEKSPTLLDFHLDLVSVDTASKIQLKSLAEEMQAITKGLEKVNQELAASESDGPVSEVFRKTLKDFVNEAKSQVDSVTRLYSDVGRNADALAQYFNEDPARCPFEQVTATLLNFIRMFLKAHDDNIKQAELEKKKAEKEAEIEKKAKKEAEMEKGKGSGLTRKSKKDNEEES 1732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06416 1732 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 188 IPR029021 -
Vivi3g06416 1732 SMART it6_source 468 1732 IPR015425 -
Vivi3g06416 1732 PRINTS Proline rich extensin signature 702 714 - -
Vivi3g06416 1732 PRINTS Proline rich extensin signature 674 690 - -
Vivi3g06416 1732 PRINTS Proline rich extensin signature 734 750 - -
Vivi3g06416 1732 PRINTS Proline rich extensin signature 800 825 - -
Vivi3g06416 1732 MobiDBLite consensus disorder prediction 558 576 - -
Vivi3g06416 1732 SMART PTEN_C2_2 198 338 IPR014020 -
Vivi3g06416 1732 MobiDBLite consensus disorder prediction 793 1315 - -
Vivi3g06416 1732 Gene3D - 204 336 - -
Vivi3g06416 1732 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Vivi3g06416 1732 MobiDBLite consensus disorder prediction 506 779 - -
Vivi3g06416 1732 PANTHER FORMIN-J 1217 1710 - -
Vivi3g06416 1732 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Vivi3g06416 1732 MobiDBLite consensus disorder prediction 697 716 - -
Vivi3g06416 1732 Coils Coil 1585 1605 - -
Vivi3g06416 1732 Pfam Formin Homology 2 Domain 1309 1678 IPR015425 -
Vivi3g06416 1732 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 336 IPR035892 -
Vivi3g06416 1732 MobiDBLite consensus disorder prediction 536 557 - -
Vivi3g06416 1732 MobiDBLite consensus disorder prediction 1692 1732 - -
Vivi3g06416 1732 Gene3D Protein tyrosine phosphatase superfamily 14 203 IPR029021 -
Vivi3g06416 1732 MobiDBLite consensus disorder prediction 514 528 - -
Vivi3g06416 1732 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1303 1704 IPR015425 -
Vivi3g06416 1732 MobiDBLite consensus disorder prediction 1081 1292 - -
Vivi3g06416 1732 Coils Coil 1679 1713 - -
Vivi3g06416 1732 MobiDBLite consensus disorder prediction 609 669 - -
Vivi3g06416 1732 MobiDBLite consensus disorder prediction 882 1074 - -
Vivi3g06416 1732 MobiDBLite consensus disorder prediction 671 687 - -
Vivi3g06416 1732 MobiDBLite consensus disorder prediction 744 758 - -
Vivi3g06416 1732 MobiDBLite consensus disorder prediction 795 872 - -
Vivi3g06416 1732 Gene3D Formin, FH2 domain 1322 1717 IPR042201 -
Vivi3g06416 1732 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1251 1698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06416 Vivi-Chr3 174591301 174605113 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06416 1 622 FH2 protein (formin) Gene Family AT5G07740 58.333 0.0 746
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06416 - - mtr:25488802 1204.12