Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06362 ATGGCCACCCAAACCCCTTCTGAATCCCCCGCCCATTCTCTTCCCGACGTCGATGACTACGTCTTGGCAAATGGACCAGAAGGATTAGAATGGGACGCATTTCATTATGTTTACGAGCTTGTACAAAAGGGTAATTTGGCCTTTCGGGAGAACAGAATGGAAGAGGCAATCAGCTATTACTCAAGAGCCTATAACATCAAATCTAATGATCCAATTATTCTCAGCAATCGAAGTGCGGCTTATATTAGGATTAGCCAATATTTAATGCATAGATCATCATCATTCTCAGAACAAAGGCCATTGAGTGGGCTTGATCCCACAACACTTGCCGAACTGGGTTTGAAGGACGCTGCAAGGCTTATTGACCTCCAGAGTAATTCAGTAAAGGCATACCTTTTGAAGGCCAATGCTCTTATTCTATTAGAGAAATATGATGTGGCTCGGGATGTTATTCTTTCAGGACTTCAAGTTGATCCTTTTAGTAATTCCCTTCGGGAATGTCTTCAAATAGTGGAAAGAGTATCATCATCTAATTCAACAGGGAGGAGTTCGCATGTACAGCCCGACCGTAATGATGACTTTGATTGCACTCTCTGTCTGAAGTTGTTGTATGAACCTGTCACAACCCCCTGTGGACATTCTTTTTGCCGTTCATGTCTATTTCAATCAATGGATCGTGGGAACAGATGCCCATTGTGCAGGACAGTTCTCCTCCTTAACCCCAGAACATGTTCAATTAGTGTGACGTTGAAGAACATCATACAAAAAAACTTTGCAGAGGAATATGCTGAAAGGAAACAAGAACATGACAGTTTAGTCAACATTGGTGTAGATATGCTCCCTCTTTTTGTCATGGATGTTGTCTTACCATGTCAAAGGTTTCCACTAAATATATTTGAACCTCGTTATAGACTTATGGTAAGAAGAATAATGGAAGGCAATCATCGGATGGGAATGGTTATAATAGATTCTTCAACAGGTTCATTGGCAGAGTTTGGCTGTGAAGTGGAAATCACAGAGTGTGAGCCACTTCCAGATGGTCGATTTTATATAGAGATTGAAGGTCGTAGGAGATTTCGCAACCTTCGTTCTTGGGATCAAGATGGGTATCGTGTGGCAGAAGTTGAATGGATACAGGATATTATGCCCCCAGAAGGGACAAAAGAAAGAGAGGATTTACAGGAGTTGATAAATAATGCAGCAGAAAGTGCTCGATCATGGATAGGAAGAGCTAAAGAAGCAGCAAGACATGATCAAAGAAGATTAGAGAAATTTGTGAATGTTGAAGGAATGATACCCTCATTAAGAGACCCGGAGCGCTTTAGTTTTTGGTTGGCCACCCTCTCCAATCGGAGGCCTTCAGAAAGATTGGATCTTCTACGCATTAGAGATACCAAAGAGAGAATTAGACGAGGCCTGATATTTCTTCGGGCAGAGGAACAAGGCTGCCGAATTCAGTAA 1461 0.4203 MATQTPSESPAHSLPDVDDYVLANGPEGLEWDAFHYVYELVQKGNLAFRENRMEEAISYYSRAYNIKSNDPIILSNRSAAYIRISQYLMHRSSSFSEQRPLSGLDPTTLAELGLKDAARLIDLQSNSVKAYLLKANALILLEKYDVARDVILSGLQVDPFSNSLRECLQIVERVSSSNSTGRSSHVQPDRNDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDRGNRCPLCRTVLLLNPRTCSISVTLKNIIQKNFAEEYAERKQEHDSLVNIGVDMLPLFVMDVVLPCQRFPLNIFEPRYRLMVRRIMEGNHRMGMVIIDSSTGSLAEFGCEVEITECEPLPDGRFYIEIEGRRRFRNLRSWDQDGYRVAEVEWIQDIMPPEGTKEREDLQELINNAAESARSWIGRAKEAARHDQRRLEKFVNVEGMIPSLRDPERFSFWLATLSNRRPSERLDLLRIRDTKERIRRGLIFLRAEEQGCRIQ 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06362 486 ProSitePatterns Zinc finger RING-type signature. 211 220 IPR017907 -
Vivi3g06362 486 SMART ring_2 196 233 IPR001841 -
Vivi3g06362 486 SMART tpr_5 128 161 IPR019734 GO:0005515
Vivi3g06362 486 SMART tpr_5 37 70 IPR019734 GO:0005515
Vivi3g06362 486 Pfam ATP-dependent protease La (LON) substrate-binding domain 280 476 IPR003111 -
Vivi3g06362 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 275 IPR013083 -
Vivi3g06362 486 ProSiteProfiles Zinc finger RING-type profile. 196 234 IPR001841 -
Vivi3g06362 486 Pfam Tetratricopeptide repeat 41 69 IPR019734 GO:0005515
Vivi3g06362 486 CDD RING-HC_LONFs_rpt2 193 237 - -
Vivi3g06362 486 PANTHER RING FINGER PROTEIN 127 20 478 - -
Vivi3g06362 486 Gene3D Tetratricopeptide repeat domain 36 186 IPR011990 GO:0005515
Vivi3g06362 486 SUPERFAMILY TPR-like 36 169 IPR011990 GO:0005515
Vivi3g06362 486 ProSiteProfiles TPR repeat profile. 37 70 IPR019734 GO:0005515
Vivi3g06362 486 Gene3D - 278 380 IPR046336 -
Vivi3g06362 486 Pfam Zinc finger, C3HC4 type (RING finger) 196 233 - -
Vivi3g06362 486 SUPERFAMILY PUA domain-like 280 476 IPR015947 -
Vivi3g06362 486 ProSiteProfiles Lon N-terminal domain profile. 277 478 IPR003111 -
Vivi3g06362 486 Gene3D - 411 478 - -
Vivi3g06362 486 SUPERFAMILY RING/U-box 189 258 - -
Vivi3g06362 486 SMART lon_5 279 478 IPR003111 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06362 187 237 C3H Transcription Factor Family AT1G74990 37.037 1.09e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06362 - - lja:Lj0g3v0312049.1 794.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g06362 3 170278222 170287871 Vivi3g06362 3 170278222 170287871 ECH