Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06341 ATGGAGAGAAAGGGGCTTGATTTGAATAAAGAAACAAGTGGTGTGAATAATGGTAATAAGATTGGTGATGGTTTTGTTGATAGAAGTAAAGTAAGGATTTTGCTTTGTGATACCGATTCAAATACCTCTCAAGAGGTTGTTACACTTCTCTTGAGATGTTGTTATCAGGTTATTTCAGTGAAGTCAGCAAGACAGGTAATTGATGCACTGAATGCAGAGAGTGAAAATATAGATCTCATATTAGCTGAAGTTGGCCTTCCGAAGAAGAAGGGTATGAAGATGTTGAAGTACATAGCACGAGATAAAGAATTGCGCAGAATTCCTGTCATAATGATGTCTGCACAAGATGAGGTATCTGTTGTTGTTAAGTGCTTGAAACTTGGAGCAGCAGACTATCTAGTAAAGCCCTTGCGCACAAACGAGCTATTAAATTTGTGGACGCACATGTGGAGAAGGAGACGCATGCTTGGACTTGCAGAGAAGAACATGTTAAATTATGACTTTGATCTGGTAGCATCAGAGCCTAGTGATGCCAATACAAATAGTACCACCTTGTTCTCAGATGACACCGATGATAGGTCCAAAAGAAGCACCCTTCCAGAGACAGGAATGTCATCCCAACAAGAGCATGAGTCTACTATTGCTAATGCCGCTGATGTTGAGGAACCCCCAGATGACCATGCTTCTGAAAGTCAGCCTGATGCTCATGGAATAAATGATCAGAGGACAGAACATTTTTCATCTGGTCCAAAAAAGAGTGAACTAAGGATCGGGGTTGGGGAGTCATCAGCCTTCTTCACATATGTTAAAGCATCAATGATAAAGAGAAACATTGAAGGGATCATTCATGTTGACAACAATTCTGCTGCACATGTGCAGATGGAAGTTATGCATCAAACATTTGCTCAACAAGGGGTTAATGACCTCGAAATATGTAAAAATGGAGAGACGTGTGAAAGTCAATCGCAAGATGACTTCCCCAGCAGCAATAGTATACCTGATTCCTTATCTATTGAGAGATCTTGTACTCCACCTTCATCTAAGGAAGCTTCACATCAAAACGGTTATAGAGAAGAAAATTTGAATCACAACCGTCCGAAACATCCAAGAAATGGAACATCTTGTTCCGAGCTTGAAATGTCAAACATGGCCGCACAACATGCTTATCCATATTATATGCCGGGAGTTGTTAATCATGTTATGATGCATTCGTCAGCACAAATACATCAAACCAATGACCTGCAGAATCATGCTGCGACATCTATGATTGCCCAGTACAACCATGTTCCACAAGGCGGTCCTCATGCCACTGCAATGATGTCTTATCCGTATTACCCGATGAGTATGTGCTCACAACCTGGTCAGATTCCTACACCTAATTCATGGCCAACCTTTGGAGGTTTAAATCCATCCGAAGCAAATTTAAGTAAAGTTGATAGGAGAGAAGCAGCGTTGATTAAATTCAGGCAGAAAAGGAAAGAGCGCTGCTTTGATAAGAAAATTAGGTATGTCAATCGAAAACAACTTGCTGAAAGTCGGCCTGGTGTGAGGGGGCAGTTTGTCAGAAAGTTGAATGGTGCTAATGTGGCTCTTAATGGACAGCCTCCTTCCATTGAATTTAATGAAGATGGTCAAGAAGATGAAGATGAACAGGGAGCTAAAGACTCTCCCAGAGATGCTTGA 1683 0.4124 MERKGLDLNKETSGVNNGNKIGDGFVDRSKVRILLCDTDSNTSQEVVTLLLRCCYQVISVKSARQVIDALNAESENIDLILAEVGLPKKKGMKMLKYIARDKELRRIPVIMMSAQDEVSVVVKCLKLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNMLNYDFDLVASEPSDANTNSTTLFSDDTDDRSKRSTLPETGMSSQQEHESTIANAADVEEPPDDHASESQPDAHGINDQRTEHFSSGPKKSELRIGVGESSAFFTYVKASMIKRNIEGIIHVDNNSAAHVQMEVMHQTFAQQGVNDLEICKNGETCESQSQDDFPSSNSIPDSLSIERSCTPPSSKEASHQNGYREENLNHNRPKHPRNGTSCSELEMSNMAAQHAYPYYMPGVVNHVMMHSSAQIHQTNDLQNHAATSMIAQYNHVPQGGPHATAMMSYPYYPMSMCSQPGQIPTPNSWPTFGGLNPSEANLSKVDRREAALIKFRQKRKERCFDKKIRYVNRKQLAESRPGVRGQFVRKLNGANVALNGQPPSIEFNEDGQEDEDEQGAKDSPRDA 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06341 560 MobiDBLite consensus disorder prediction 318 351 - -
Vivi3g06341 560 MobiDBLite consensus disorder prediction 318 375 - -
Vivi3g06341 560 Pfam Response regulator receiver domain 33 144 IPR001789 GO:0000160
Vivi3g06341 560 ProSiteProfiles CCT domain profile. 481 523 IPR010402 GO:0005515
Vivi3g06341 560 PANTHER TWO-COMPONENT RESPONSE REGULATOR 31 316 IPR045279 GO:0009736
Vivi3g06341 560 MobiDBLite consensus disorder prediction 199 214 - -
Vivi3g06341 560 ProSiteProfiles Response regulatory domain profile. 32 150 IPR001789 GO:0000160
Vivi3g06341 560 MobiDBLite consensus disorder prediction 220 251 - -
Vivi3g06341 560 MobiDBLite consensus disorder prediction 176 254 - -
Vivi3g06341 560 SUPERFAMILY CheY-like 27 156 IPR011006 -
Vivi3g06341 560 Pfam CCT motif 481 523 IPR010402 GO:0005515
Vivi3g06341 560 MobiDBLite consensus disorder prediction 352 372 - -
Vivi3g06341 560 SMART REC_2 31 146 IPR001789 GO:0000160
Vivi3g06341 560 Gene3D - 31 246 - -
Vivi3g06341 560 MobiDBLite consensus disorder prediction 526 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06341 Vivi-Chr3 169669313 169674095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06341 6 542 Response Regulator Gene Family AT5G61380 48.796 4.22e-171 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vivi3g06341 Response_reg 8.9e-18 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06341 K12127 - gmx:100271889 822.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g06341 3 169669313 169674095 Vivi3g06341 3 169669313 169674095 ECH