Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06320 ATGGAAGCTGTAAATGCAGCACCGGATAATAGCATGACACGGTATGTAATATCTATAAAGAAAGGAGTTTACAAAGAAAAGGTTTTTGTCAATGAAAAGAAGTGGAATATCACTATGATCGGAGAAGGTATGGGAGCCACAATCATAACTGATAACATGAGTTGTGGTCAAAATAAATCAAATTACTGTACTTATGACTCAGCTACCTTTACTGTCTTTGGTCCAAGATTCATAGCACAGGATATTTCTTTCATGAATACTGCTGGTCCAGAAAATAATCAAGCATTGGCACTTAAATCTGACTCCGACTTCTCTGCCTTTTATAGAGTTGAGATTTCTGGTCATCAAGATAGTTTATGTGCCAACACGAATCGTCAATTTTATAGAGAGTGTAAAATTAGTGGCACATCTGACTTTATTTTTGGATATGCCACTGCAGTGTTTCAAAATTGTAAAATATTAGTAAGAAAAGGGAAAGCGGGACAACAATACACAATCACTGCTCAAGGAGGATATCAAGGAATACCAACTGGATTTTCATTTCAATTTTGCGACATATTAGCAGATTATGATTTTTTACCCCTAATTAATTCATCCTCAACATTTCTTGGTAGACCATGGAAGTCAAATGCTAGAACAATTTTCATGCAATCAAACATAAGTAATATGTTGAATCCGCAAGGTTGGTTAGAGTGGGAAGGTGCCCCCGAATATTTAAATACATTGTTTTTTGCAGAATATAAGAATTATGGGCCAGGAGCTAACACCAAAAATCGAGTGAAATGGTCAGGCTACCATTTATTAAATTTTCACCAGGCTAGTAAATTCACAGTAGCAAACTTTATTTTAGGCGATCAATGGTTACCTTCAACGAAAATACCGTTTACTAGTGGATTATGA 900 0.3556 MEAVNAAPDNSMTRYVISIKKGVYKEKVFVNEKKWNITMIGEGMGATIITDNMSCGQNKSNYCTYDSATFTVFGPRFIAQDISFMNTAGPENNQALALKSDSDFSAFYRVEISGHQDSLCANTNRQFYRECKISGTSDFIFGYATAVFQNCKILVRKGKAGQQYTITAQGGYQGIPTGFSFQFCDILADYDFLPLINSSSTFLGRPWKSNARTIFMQSNISNMLNPQGWLEWEGAPEYLNTLFFAEYKNYGPGANTKNRVKWSGYHLLNFHQASKFTVANFILGDQWLPSTKIPFTSGL 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06320 299 FunFam Pectinesterase 4 1 299 - -
Vivi3g06320 299 SUPERFAMILY Pectin lyase-like 2 298 IPR011050 -
Vivi3g06320 299 Gene3D - 1 299 IPR012334 -
Vivi3g06320 299 Pfam Pectinesterase 2 285 IPR000070 GO:0030599|GO:0042545
Vivi3g06320 299 PANTHER PECTINESTERASE 2 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06320 Vivi-Chr3 168893446 168894569 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06320 1 299 Carbohydrate Esterase AT4G33220 52.824 9.38e-111 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06320 K01051 - gmx:100798620 360.918