Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06315 ATGGAAGCAGTAAATGCAGCACCGGATAATAGCATGACACGGTATGTAATATCTATAAAGAAAGGAGTTTACAAAGAAAAGGTTTTTATCAATGAAAAAAAGTGGAATATCACTATGATTGGAGAAGGTATGGGAGCCACAGTCATAACTGATAACATGAGTTGTGGTCAAAATAAATCATTTGAATGTACTTACGACTCAGCTACCTTTACTGTCTTTGGTCCAAGATTCATAGCACAGGATATTTCTTTCATGAACACTGCTGGTCCAGAAAATAATCAAGCATTGGCACTCAAATCTGACTCCGACTTCTCTGCCTTTTATAGAGTTGAGATTTCTGGTTATCAAGATAGTTTATGTGTCAACATAAATCGTCAATTTTATAGAGAGTGTAAAATCAGTGGCACAGTTGACTTTATTTTTGGATATGGCACTGCAGTGTTTCAAAATTGTTCAATATTAGTAAAAAAAGGGATATCGGGACAAGAAAATACAATCACTGCTCAAGGAGGATACAAAGGAACACCAAGTGGATTTTCGTTTCAATTTTGCAACATTTTAGCAGATGATGATCTTTTACCCTTAATCAATTCAACCTCAACATATTTGGGTAGACCATGGAAGCCAAATGCTAGAACAATTTTCATGCAATCAGACATAAGCAATGTGTTGAATCCAAAAGGATGGTTAGAGTGGGTAGGTGCCCCCGAATATTTAGATACATTATTTTTTGCGGAATATAATAATTATGGGCCAGGAGCTAACACCGAAAATCGAGTGAAATGGTCAGGCTACCATTTGTTGAATTTTGATCAGGCTAGTAATTTTACAGTGGCAAACTTTATTTTAGGAGATCAATGGTTACCTTCAACGGGAATACCGTTTACTAGTGGATTAAAATAA 903 0.3577 MEAVNAAPDNSMTRYVISIKKGVYKEKVFINEKKWNITMIGEGMGATVITDNMSCGQNKSFECTYDSATFTVFGPRFIAQDISFMNTAGPENNQALALKSDSDFSAFYRVEISGYQDSLCVNINRQFYRECKISGTVDFIFGYGTAVFQNCSILVKKGISGQENTITAQGGYKGTPSGFSFQFCNILADDDLLPLINSTSTYLGRPWKPNARTIFMQSDISNVLNPKGWLEWVGAPEYLDTLFFAEYNNYGPGANTENRVKWSGYHLLNFDQASNFTVANFILGDQWLPSTGIPFTSGLK 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06315 300 ProSitePatterns Pectinesterase signature 2. 133 142 IPR033131 -
Vivi3g06315 300 PANTHER PECTINESTERASE 2 289 - -
Vivi3g06315 300 FunFam Pectinesterase 4 1 299 - -
Vivi3g06315 300 SUPERFAMILY Pectin lyase-like 2 298 IPR011050 -
Vivi3g06315 300 Gene3D - 1 299 IPR012334 -
Vivi3g06315 300 Pfam Pectinesterase 2 285 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06315 Vivi-Chr3 168631172 168632277 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06315 1 299 Carbohydrate Esterase AT4G33220 57.807 1.08e-119 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06315 K01051 - gmx:100798620 383.645