Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06312 ATGGAAGCAGTAAATGCAGCACCGGATAATAGCATGACACGGTATGTAATATCTATAAAGAAAGGAGTTTACAAAGAAAAGGTTTTTATCAATGAAAAAAAGTGGAATATCACTATGATTGGAGAAGGTATGGGAGCCACAGTCATAACTGATAACATGAGTTGTGGTCAAAATAAATCATTTGAATGTACTTACGACTCAGCTACCTTTACTGTCTTTGGTCCAAGATTCATAGCACAGGATATTTCTTTCATGAACACTGCTGGTCCAGAAAACAATCAAGCATTGGCACTCAAATCTGACTCCGACTTCTCTGCCTTTTATAGAGTTGAGATTTCTGGCTATCAAGATAGTTTATGTGTCAACACGAATCGTCAATTTTATAGAGAGTGTAAAATTAGTGGCACATCTGACTTTATTTTTGGATATGCCACTGCAGTGTTTCAAAATTGTACAATATTAGTAAGAAAAGGGAAAGCGGGACAAAAATACACAATCACTGCTCAAGGAGGATATCAAGGAATACCAAGTGGATTTTCGTTTCAATTTTGTGACATATTAGCAGATTATGATTTTTTACCCCTAATTAATTCATCCTCAACATTTCTTGGTAGACCATGGAAGTCAAATGCTAGAACAATTTTCATGCAATCAAACATAAGTAATATGTTGAATCCGCAAGGTTGGTTAGAGTGGGAAGGTTCCCCCGAATATTTAGATACATTATTTTTTGCGGAATATAATAATTATGGACCAGGAGCTAATACCGAAAATCGAGTGAAATGGTCAGGTTACCATTTGTTGAATTTTGATCAGGCTAGTAATTTTACAGTGGCAAACTTTATTTTAGGAGATCAATGGTTACCTTCAACGGGAATACCGTTTACTAGTGGATTAAAATAA 903 0.3533 MEAVNAAPDNSMTRYVISIKKGVYKEKVFINEKKWNITMIGEGMGATVITDNMSCGQNKSFECTYDSATFTVFGPRFIAQDISFMNTAGPENNQALALKSDSDFSAFYRVEISGYQDSLCVNTNRQFYRECKISGTSDFIFGYATAVFQNCTILVRKGKAGQKYTITAQGGYQGIPSGFSFQFCDILADYDFLPLINSSSTFLGRPWKSNARTIFMQSNISNMLNPQGWLEWEGSPEYLDTLFFAEYNNYGPGANTENRVKWSGYHLLNFDQASNFTVANFILGDQWLPSTGIPFTSGLK 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06312 300 Gene3D - 1 299 IPR012334 -
Vivi3g06312 300 PANTHER PECTINESTERASE 2 289 - -
Vivi3g06312 300 FunFam Pectinesterase 4 1 299 - -
Vivi3g06312 300 Pfam Pectinesterase 2 285 IPR000070 GO:0030599|GO:0042545
Vivi3g06312 300 SUPERFAMILY Pectin lyase-like 2 298 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06312 Vivi-Chr3 168435873 168436914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06312 1 299 Carbohydrate Esterase AT4G33220 55.482 9.54e-115 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06312 K01051 - gmx:100798620 373.629