Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06310 ATGAAGAAGAGACAAATTGTGGCTAAGACTTCATCTTCAATTACAAGAAATATTCGATACGGTGAGTGCCAGAAGAATCATGCAGCAAATATTGGAGGGTATGCTGTGGATGGTTGCAGGGAGTTCATGGCTAGCACAGGAGAAGAAGGAACATGTGGGGCTCTTACATGTGCTGCTTGTGGTTGTCACAGGAACTTTCATAGAAGGGAAGTGCAAACTGAAGTTGTTTGTGAGTACTCTCCACCTAATTCTGGTCGATGA 261 0.4368 MKKRQIVAKTSSSITRNIRYGECQKNHAANIGGYAVDGCREFMASTGEEGTCGALTCAACGCHRNFHRREVQTEVVCEYSPPNSGR 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06310 86 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 11 74 - -
Vivi3g06310 86 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 19 71 IPR006456 -
Vivi3g06310 86 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 20 70 IPR006456 -
Vivi3g06310 86 Pfam ZF-HD protein dimerisation region 18 71 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06310 Vivi-Chr3 167867052 167869332 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06310 1 84 Zinc finger-homeobox gene family AT1G18835 73.333 1.02e-40 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vivi3g06310 ZF-HD_dimer 8.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06310 - - mtr:11409341 166.007