Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06296 ATGATGGGGAGACCACCTTGCTGTGACAAAGTTGGTGTTAAGAAAGGTCCTTGGACTCCAGAAGAGGATATAGTTTTGGTATCTTACATTCAAGAACATGGACCTGGGAATTGGAGATCTGTTCCCAATAGTACAGGTTTGATGAGATGTAGTAAAAGTTGCAGACTGAGATGGACGAATTACCTTAGACCAGGTATCAAACGAGGTAATTTCAATGATCATGAAGAAAAGATGATAATCCATCTTCAAGCACTTTTGGGAAACAGGTGGGCTGCCATAGCTTCCTATCTTCCACAAAGGACAGACAATGACATAAAAAACTACTGGAACACACATTTGAAGAAAAAGCTAAAGAACATCCAAACAGGGAATAACAATAACAACAATGAAGAAGAAGGAAACTCTTCTTCTCCACAGGTAAAAGGCCAATGGGAAAGAAGGCTTCAAACAGATATCCATACAGCAAAACAAGCTTTATGCGAAGCACTTTCTCTTGACAAATCATCATCAACGCCTCTTTTACCCGAAGCCGAAACCACAACACCGTTCCCTTACGCATCCAACACTGAAAACATTGCTAAATTGCTCGAAAAGTGGATGAAAAAACCTACAGGTTCAAGCTCTAGTGAAGGTGCAAAGAGTAATGTTGCATGCATGCAAAAAGATCAAGCAGGTTTTGACTCTTTGTTGAGCTTTAACTCGTTTAATTCTGATTGTTCTCAATCTGTGGTTGAAGAAAACAACAATTTGACAATGGATTCTTGCTTCTATCAATATGAAAATAAGCCAAACCAGGAAACTCAAGTTCCTCTCATGTTCTTGGAAAAATGGCTTTTTGATGATGGAGCTGCTCAGTGCAATGAAGATATAATGAACATGTCATTGCAGGAAAATACATCAGGGTTGTTTTAG 912 0.3904 MMGRPPCCDKVGVKKGPWTPEEDIVLVSYIQEHGPGNWRSVPNSTGLMRCSKSCRLRWTNYLRPGIKRGNFNDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKNIQTGNNNNNNEEEGNSSSPQVKGQWERRLQTDIHTAKQALCEALSLDKSSSTPLLPEAETTTPFPYASNTENIAKLLEKWMKKPTGSSSSEGAKSNVACMQKDQAGFDSLLSFNSFNSDCSQSVVEENNNLTMDSCFYQYENKPNQETQVPLMFLEKWLFDDGAAQCNEDIMNMSLQENTSGLF 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06296 303 Gene3D - 14 67 - -
Vivi3g06296 303 MobiDBLite consensus disorder prediction 120 145 - -
Vivi3g06296 303 FunFam Transcription factor MYB30 69 127 - -
Vivi3g06296 303 Gene3D - 69 143 - -
Vivi3g06296 303 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Vivi3g06296 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Vivi3g06296 303 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Vivi3g06296 303 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Vivi3g06296 303 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Vivi3g06296 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Vivi3g06296 303 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vivi3g06296 303 CDD SANT 70 113 IPR001005 -
Vivi3g06296 303 SMART sant 67 115 IPR001005 -
Vivi3g06296 303 SMART sant 14 64 IPR001005 -
Vivi3g06296 303 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 238 - -
Vivi3g06296 303 CDD SANT 17 62 IPR001005 -
Vivi3g06296 303 FunFam MYB-related transcription factor 14 67 - -
Vivi3g06296 303 MobiDBLite consensus disorder prediction 120 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06296 Vivi-Chr3 166648139 166650641 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06296 2 303 MYB Transcription Factor Family AT5G62470 52.186 1.81e-108 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi3g06296 Myb_DNA-binding 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06296 K09422 - gmx:100794319 408.297