Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06290 ATGGCTCAACAACAACAATTCTGCAATGTAGATCCAAGAATATGGCAAGAATGTGCAGGAGATTCTTTCACTGTTCCTAAACTCCATTCTAGAGTTTATTATTTTCCTATTGGTCATTTAGACCATTCTCCTATAACCCCTACCACTCAAACTCTCTCCCTCATCCACCCAATCATTCTCTGCACTCTCTCCTCTGTTGATTTTCTTGCAGATCTTGAAACTGATCAAATCTTTGCAAAACTACTCCTCACTCCCGTCATTGACGCAACTGTTGTTCCTCCTGTTGAGGCTAGCAATCAAGAAGACAATGGTGATCGTGTCGTTTCATATGCAAAGACTCTAACTACGTCTGATGCTAACAATAAGGGTTCATTCTATGTACCTCGGGCCTGCGCCGACTCAATCTTTTTGCCGCTTGACTTGACAACTCCATCGCCATCTCAAGAACTTTCTGTCACTTATGTTTGCGGTGTTGTCTGGACCATTTGCCACGTCCATCGCGGGAATCCCGAGCGATACCTATTCACCACCGGCTGGAATGCATTTGTTAAGAAGAAGCATCTTGTCGTCGGAGATACCCTTGTTTTCATTAAAAACTCGGCTAGAAAGATATTTGTTGGAATCCGCCGCCACAATATGTCTGCGGCCGCGAGTAAAATAACGGAAAAGACAGTTATCAATGCGGTAGAATTGGCTAAGAAGAATACACCATTTGAAGTCATGTGTTATCCGACGGTGGATGGTTTTGTTTTGTGGTGGAAGATGAAGTTGTGA 774 0.4341 MAQQQQFCNVDPRIWQECAGDSFTVPKLHSRVYYFPIGHLDHSPITPTTQTLSLIHPIILCTLSSVDFLADLETDQIFAKLLLTPVIDATVVPPVEASNQEDNGDRVVSYAKTLTTSDANNKGSFYVPRACADSIFLPLDLTTPSPSQELSVTYVCGVVWTICHVHRGNPERYLFTTGWNAFVKKKHLVVGDTLVFIKNSARKIFVGIRRHNMSAAASKITEKTVINAVELAKKNTPFEVMCYPTVDGFVLWWKMKL 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06290 257 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 246 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi3g06290 257 CDD B3_DNA 109 210 IPR003340 GO:0003677
Vivi3g06290 257 SMART B3_2 110 212 IPR003340 GO:0003677
Vivi3g06290 257 SUPERFAMILY DNA-binding pseudobarrel domain 106 213 IPR015300 -
Vivi3g06290 257 Gene3D - 107 211 IPR015300 -
Vivi3g06290 257 ProSiteProfiles B3 DNA-binding domain profile. 110 212 IPR003340 GO:0003677
Vivi3g06290 257 Pfam B3 DNA binding domain 111 211 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06290 Vivi-Chr3 165774771 165775544 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06290 10 246 B3 DNA Binding Superfamily AT1G77850 37.634 1.34e-57 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi3g06290 B3 4.4e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06290 - - vvo:131659319 530.02