Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06273 ATGGTTCACGTCTCCTTTTACCGCAATTATGGAAAAACATTCAAGAAACCCCGTCGTCCTTACGAGAAGGAGCGTTTAGACGCAGAGTTGAAGCTCGTCGGAGAATACGGACTCAGGTGCAAACGTGAGCTCTGGAGAGTACAGTACGCTCTGAGTCGAATCAGGAACAATGCTAGAAACCTTCTTACTCTTGATGAGAAGAATCCTCGCAGGATTTTTGAAGGTGAAGCTTTGCTTCGAAGAATGTTTCGTTATGGATTGCTCGATGAGACGCAGAATAAGCTTGATTATGTTCTTGCTTTAACTGTTGAGAATTTTCTGGAGCGTCGTCTTCAGACTCTTGTTTTTAAATCTGGTATGGCTAAGTCTATTCATCATGCTAGGGTTCTCATCAGACAGAGGCATATCAGGGTTGGGAGGCAGGTTGTTAACATCCCATCTTTCATGGTGAGGGTTGACTCACAGAAGCATATTGACTTTTCACTTACAAGTCCACTCGGTGGTGGACGTCCTGGAAGGGTGAAGCGAAAGAACCTCAAGGCTGCTGCCAAGAAGGCTTCTGGTGGTGATGGTGATGAGGAGGATGAGGATTAA 594 0.4545 MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARNLLTLDEKNPRRIFEGEALLRRMFRYGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRKNLKAAAKKASGGDGDEEDED 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06273 197 PANTHER 30S 40S RIBOSOMAL PROTEIN 7 183 IPR022801 GO:0003735|GO:0015935|GO:0019843
Vivi3g06273 197 Pfam Ribosomal protein S4/S9 N-terminal domain 8 108 IPR001912 GO:0019843
Vivi3g06273 197 SUPERFAMILY Alpha-L RNA-binding motif 12 159 - -
Vivi3g06273 197 ProSitePatterns Ribosomal protein S4 signature. 107 131 IPR018079 GO:0019843
Vivi3g06273 197 MobiDBLite consensus disorder prediction 163 197 - -
Vivi3g06273 197 Gene3D - 108 165 IPR036986 GO:0003723
Vivi3g06273 197 ProSiteProfiles S4 RNA-binding domain profile. 109 183 - -
Vivi3g06273 197 Pfam S4 domain 109 152 IPR002942 GO:0003723
Vivi3g06273 197 NCBIfam 30S ribosomal protein S4 11 166 IPR005710 GO:0003735|GO:0006412|GO:0015935
Vivi3g06273 197 CDD S4 109 153 - -
Vivi3g06273 197 FunFam 40S ribosomal protein S9 108 189 - -
Vivi3g06273 197 SMART s4_6 109 180 IPR002942 GO:0003723
Vivi3g06273 197 SMART Ribosomal_S4_2 8 108 IPR001912 GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06273 Vivi-Chr3 165105674 165107318 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06273 1 187 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 91.979 2.43e-126 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06273 K02997 - gmx:100305663 353.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01985 1 42013756 42016095 Vivi3g06273 3 165105674 165107318 ECH
Vivi3g06273 3 165105674 165107318 Vivi3g06273 3 165105674 165107318 ECH