Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06267 ATGTCTATCTACCAAGCTCCTGGTTTCCGATTCCACCCTACCGATGAAGAGATCGTTTGTTTCTACCTCAAGCGGAAGCTCACCGGACACTTACCTTTCCGTTTCGACCATCTTGCTGTGGTTGACATCTACAAGTTCGAGCCATGGGATCTTCCCAGTTTGTCGAAGCTGAAGAACAAGGATTTGGAATGGTACTTCTTCACTGTGCTGGACAAGAAGTACGGTAATAGTTCAAGGACAAATCGTGCTACTGACAGAGGGTACTGGAAGACTACTGGAAAGGATCGCCTTATCAAGAACGGGCAGGACCCTGTTGGAATGAAGAAGACCCTTGTTTATCACTTAGGGCGGGCCCCACATGGTGATCGAACCAATTGGGTCATGCATGAGTATAGGATGATTGCTGAAGAATTGGCCAAAGCTGGAGTGCAGGATGCTTATGTGCTGTGTAGGATCTTCGAGAAGAGTGGTCCGGGGCCTAAGAATGGGGAGAAGTATGGGGCTCCCTTTGTTGAGGCCGAATGGGAGAATATTATTGATGGGCGACAGGTGGATTCCTTGCCTCCTGTTGATAATGAGCTTTTGAAACTACAAGTGTTTGATGAACAGGTGTATCCCTTGACAGCTGTTGATAGCGAGCGTTCAAAAGATAAAGTGCCCGCTCCTACTGATGATGATTATTTTGAAACCAATGACCTTGACCAGGAGCTTGATACTAGTATTACATTTGGAAGTGCTGACTTGCCATCGAACTTCTGTTATGGGGAGTGTAGTAGCCATTCCCAACCATTTGTTAATGATCATAAACAAGTCGAAGCTGCTCTTGGTATTTATGATAGTCAGATTGGCCTGCCTAATAATATGGCTGATCTATATGGTGTGGATATTAATTCAGTGCAAGATGGATACAATGGTGAGACAAACAATAATGAGACTCCTCTGAATTTCAATTTTGAATCTGAGGATCCAGATCTATATTTTGATGCCTCCGGTTATCTTATGAGTTTGAATGAAGAATACGTGGATGCCAATGATGTTAAGAATCTTGACGGGGTTATTCCCTCCGAGGTAGATCCTTCTGTTGCTGCAATCTTAGATGAGTACCTTACATGCCCCGATGAAGATATTTCCAAATATATATGCTTTGATTCTCCTTTGAATGTAGAGAGTGAAAGCCCCATTGCCAATCATGGACTTTCTTTCATTGAGCAGCAGAATATGGAAGGCGAAACCAATGGTAGTATTTTGGCAAACAAACATGTTTTTGATGAACAGTCTAGTAATGAAAACGTTTTGCCAAAGGAGGATTTGAAGGTGTCCAATTGGATCTCTGGAGATGCAAATGCTTTTGTAAAGCAAGCCAATAATTTGTTGGCTCGCATTCCTGCTCCACCTGCATTTGCTTCAGAGTTTCCTACTAAGGAGTTTGCTATTGGGTCTTCCAATTCAGCCCATATTACAGCAGGTATGAGTATGATCAGCATTACAGACATTACTTTTGGAGACAATGCGATGGATTGGATGGTGGGCAAGAATGGAGGTTTTCACACCATTATGTCTTCTGGGTTTCCCCAAACTGATGTTAACTCTGCAACTCTGGTGCCTACTTCTGGCTTGGTCTGTAGCAAAACTGCATTTATGTTATCACATGGTTGGGTTTTCTTGATGGGTTTCTCAGTTGTGATTCTATCTTTGAGTTTCAAGATTGGAAGCTTCATGTATACTGTTAAATGA 1734 0.4279 MSIYQAPGFRFHPTDEEIVCFYLKRKLTGHLPFRFDHLAVVDIYKFEPWDLPSLSKLKNKDLEWYFFTVLDKKYGNSSRTNRATDRGYWKTTGKDRLIKNGQDPVGMKKTLVYHLGRAPHGDRTNWVMHEYRMIAEELAKAGVQDAYVLCRIFEKSGPGPKNGEKYGAPFVEAEWENIIDGRQVDSLPPVDNELLKLQVFDEQVYPLTAVDSERSKDKVPAPTDDDYFETNDLDQELDTSITFGSADLPSNFCYGECSSHSQPFVNDHKQVEAALGIYDSQIGLPNNMADLYGVDINSVQDGYNGETNNNETPLNFNFESEDPDLYFDASGYLMSLNEEYVDANDVKNLDGVIPSEVDPSVAAILDEYLTCPDEDISKYICFDSPLNVESESPIANHGLSFIEQQNMEGETNGSILANKHVFDEQSSNENVLPKEDLKVSNWISGDANAFVKQANNLLARIPAPPAFASEFPTKEFAIGSSNSAHITAGMSMISITDITFGDNAMDWMVGKNGGFHTIMSSGFPQTDVNSATLVPTSGLVCSKTAFMLSHGWVFLMGFSVVILSLSFKIGSFMYTVK 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06267 577 SUPERFAMILY NAC domain 4 155 IPR036093 GO:0003677|GO:0006355
Vivi3g06267 577 Gene3D NAC domain 14 157 IPR036093 GO:0003677|GO:0006355
Vivi3g06267 577 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 234 - -
Vivi3g06267 577 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Vivi3g06267 577 ProSiteProfiles NAC domain profile. 5 155 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06267 Vivi-Chr3 164884913 164888166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06267 6 218 NAC Transcription Factor Family AT3G10480 46.494 4.34e-66 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi3g06267 NAM 6e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06267 - - vvo:131662560 1187.17