Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06265 ATGTCTAGCAGGAGGTCACGGTCTAGGCAAACAACTAGTTCAAGGAATATCACCGACGATCAGATCCATGATCTTGTTTCCAAGTTGCAGCAGCTTCTTCCTGAGATTCGCAATAGGACCTCTGACAAGGCTTCAGCTTCGAGGGTGTTGCAGGAGACATGCAACTATATTAGAAATTTGCACAGAGAAGTGGACGACCTTAGCGAACGTTTATCTGAGCTACTGGCTACAACAGACACGGCACAAGCAGCAATCATTAGAAATTTACTTATGCAATAG 279 0.448 MSSRRSRSRQTTSSRNITDDQIHDLVSKLQQLLPEIRNRTSDKASASRVLQETCNYIRNLHREVDDLSERLSELLATTDTAQAAIIRNLLMQ 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06265 92 CDD bHLH_AtPRE_like 17 77 - -
Vivi3g06265 92 MobiDBLite consensus disorder prediction 1 20 - -
Vivi3g06265 92 FunFam Transcription factor ILI6 7 87 - -
Vivi3g06265 92 Coils Coil 57 77 - -
Vivi3g06265 92 Gene3D - 15 88 IPR036638 GO:0046983
Vivi3g06265 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 78 IPR036638 GO:0046983
Vivi3g06265 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Vivi3g06265 92 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
Vivi3g06265 92 Pfam Helix-loop-helix DNA-binding domain 20 60 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06265 Vivi-Chr3 164680013 164681646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06265 1 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 72.043 4.50e-39 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi3g06265 HLH 0.00015 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06265 - - gmx:100527636 152.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g00264 6 6041127 6042934 Vivi3g06265 3 164680013 164681646 ECH
Vivi2g01917 2 89695896 89697071 Vivi3g06265 3 164680013 164681646 ECH
Vivi3g06265 3 164680013 164681646 Vivi3g06265 3 164680013 164681646 ECH