Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06263 ATGACCAACGCTTTCTCTCTCGTAACCCAACAATACAAAGCTCTACTGAAAAAAAACGCACTTCTCTCATGGCGAAGCAAACGTTCAATTCTCCTCCAACTCCTCTCTCCAATCATCTTCATCTTCCTAATCTTCGCCGTCGACAAAGCAATCAAAGCACAAACCTCCACCACTTCATCATACAAATCCGTAAAAAACCCTTCCTCACTACCTTCCCCACCAATCCCACCCTGCGAACACAAATTCTTCGTTAAACTTCCTTGTTACGATTTCGTATGGAGTGGTGATAACAATCCAAAGTTTCACACAATTGTGAGTAGAATTATTGGTAATAATCCTGGTAGACCTATTCCGATTTCTAAAGTGAAGTCGTTTAGGGATAAGGGGGAGGTTGATCAGTGGCTTTATGATAATCCTATGCAATGTCCTGGCGCGATTCATTTTCGTGAAAAGAATGCTACTGTTATTACTTATGGGATTCAGACTAATTCTACTAGTGTTCAGAAACGGGGAAGATATGAGGATCCTACTTTTTCTTTTCAATTGCCTCTTCAGCTTGCTGCTGAACGTGAAATCGCCAGATTTCTTATTGGAGACCCGAGCTTCAAATGGAATGTTTTTTTGAAGGAATTCGCGCACCCAGCAATGAGTCCTTTCTCTGCTGTTGGAACAATAGGTCCAGCGTTTTTTCTTGCAATTGCTATGTTTAATTTTGTTCTTCAGATGAGTTCTTTGGTCACAGAAAAAGAGCTTAAACTTCGCCAGGCAATGACTGTGATGGGGCTTTACGACTCTGCATACTGGATATCATGGCTAACCTGGGAAACAGTTGTTACAGTCCTATCATCTATTCTCATAGTTCTCTCTGGCATGATGTTTCAGTTTGATTTCTTCTTGAAAAACAATTTCGCTGTTCTGTTCTTTTTGTTCTTCCTATTTGAACTAAACATGACTGGGCTGGCCTTCATGTTATCTGCTTTCATTCGTAAATCGTCTTCTGCAACAACAGTCGGCTTCTCCATATTTATTGTCGGTTTTGTGACTCAGCTTGTGGTACAAGCAGGATTTCCATATACCGATAGCATCTCTGTTACTTTCCAAAATTTATGGTCTTTGTTTCCGCCTAATCCTTTTGCTCAAGGCCTGAGTATACTTTCAGATGCAGTTTCAACCCCTGAAGATAATGGTCTAAGCTGGAGTAAACGGGGAGAATGTGGCGATTATGACGTTGACTGTGTGATCACAATTAACGATATCTATAAATGGCTTCTGGCCACATTCTTTCTGTGGTTTGTTCTGGCCTTGTACTTTGACAATATAATCCCGAATGCTATGGGTGTGAGAAAATCCGTGTTATACTTTCTAAATCCTCATTATTGGACGGGAAACGGAGGACAAAAAGTGAAAGAGGGCGGAGTTTGTAGTTGCTTAATTTCAACCCATCATGAAGATAATAGTACAGCAGATGATGAAGATGTCCTTGAGGAGGAAAATGCTGTGAAGTTGCAACAAACACAAGGTGTGGTTGACGCAAATGTTTCTGTTCAGATACATGGCATTAAAAAGACTTATCCCGGTACATTTAACATCGGTTGCTGCTTTAAATGTAATAAAAGTGCGCCTTATCACGCTCTTAAGGGCTTGTGGGTGAACTTTTCAAAGGATCAGTTATTTTGTCTTTTAGGACCGAATGGAGCTGGAAAAACTACAGCTATTAATTGTTTGACAGGGATAACTCCAGTAACTGATGGAGATGCATTGATTTATGGACATTCGATCCGAAGCTCCACTGGCATGTCAAACATTCGAAAGCTTATAGGAGTGTGTCCCCAGTTTGATATCCTATGGGATGCCCTGTCTGGTCAAGAACACCTCGAACTCTTTGCTAGTATTAAAGGCCTTTCTCCAGCTTCTATAAAATCAATTACTCAGACATCACTGGCAGAGGTGAGACTCATAGATGCAGCCAGAGTAAGATCTGGAAGTTACAGTGGAGGAATGAAACGTCGTCTCAGTGTTGCAATTGCCCTTATTGGTGACCCTAAATTAGTCATTTTGGATGAACCGACCACCGGTATGGATCCAATAACAAGGAGGCATGTGTGGGACATAATTGAAAATGCGAAAAGAGGGCGTGCCATTGTTCTCACAACGCATTCTATGGAAGAAGCTGATATTCTAAGTGACCGCATAGGAATCATGGCAAAGGGAAAGCTCCGATGCATTGGCACCTCAATTAGACTGAAGTCACGCTTTGGCACTGGTTTTATTGCTAATATTAGCTTCTATGGAAACAATAATGAAAACAGTCCTGTAAACGGTGATGCAGTATATACAAGAAGACATCATGAGGCTGTGAAGCAATTCTTCAAGAATCGTTTAGATGTAGTACCAAAAGAGGAGAACAATAACTTTCTAACTTATGTGATTCCTCATGAAAGAGAGACACTCCTGACAGATTTTTTTTCAGAGCTTCAAGATAGAGAACAAGAATTTGGGATATCTGACATCCAGCTTGGTCTAACAACTCTTGAAGAAGTTTTCTTGAATATTGCAAAGCAAGCAGAGCTGGAAAGTGCTACAGCTGAAGGGAGCCTAGTGACTTTGACCTTGACATCTGGAGAGTCTGTGGAGATTCCAATAGGAGCTAGGTTTGTGGGAATTCCAGGAACAGAGTCTTCTGAATGCCCCACAGGTTTTATGGTAGAAGTATACTGGGAGCAAGATGACACTGGTGCCCTTTGTGTCGCCGGCCACTCACAGAAAGCTCCTATTCCTCAAAATGTCCAACCACCTTCGTCTGCTACTGCCAGACAACGCCGGTCAGCGTCAGTTCATGGGGTTGTGATTGATCCAAGTCAAGTTAGTTCAGTCAATTTCCAATGA 2886 0.4165 MTNAFSLVTQQYKALLKKNALLSWRSKRSILLQLLSPIIFIFLIFAVDKAIKAQTSTTSSYKSVKNPSSLPSPPIPPCEHKFFVKLPCYDFVWSGDNNPKFHTIVSRIIGNNPGRPIPISKVKSFRDKGEVDQWLYDNPMQCPGAIHFREKNATVITYGIQTNSTSVQKRGRYEDPTFSFQLPLQLAAEREIARFLIGDPSFKWNVFLKEFAHPAMSPFSAVGTIGPAFFLAIAMFNFVLQMSSLVTEKELKLRQAMTVMGLYDSAYWISWLTWETVVTVLSSILIVLSGMMFQFDFFLKNNFAVLFFLFFLFELNMTGLAFMLSAFIRKSSSATTVGFSIFIVGFVTQLVVQAGFPYTDSISVTFQNLWSLFPPNPFAQGLSILSDAVSTPEDNGLSWSKRGECGDYDVDCVITINDIYKWLLATFFLWFVLALYFDNIIPNAMGVRKSVLYFLNPHYWTGNGGQKVKEGGVCSCLISTHHEDNSTADDEDVLEEENAVKLQQTQGVVDANVSVQIHGIKKTYPGTFNIGCCFKCNKSAPYHALKGLWVNFSKDQLFCLLGPNGAGKTTAINCLTGITPVTDGDALIYGHSIRSSTGMSNIRKLIGVCPQFDILWDALSGQEHLELFASIKGLSPASIKSITQTSLAEVRLIDAARVRSGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIENAKRGRAIVLTTHSMEEADILSDRIGIMAKGKLRCIGTSIRLKSRFGTGFIANISFYGNNNENSPVNGDAVYTRRHHEAVKQFFKNRLDVVPKEENNNFLTYVIPHERETLLTDFFSELQDREQEFGISDIQLGLTTLEEVFLNIAKQAELESATAEGSLVTLTLTSGESVEIPIGARFVGIPGTESSECPTGFMVEVYWEQDDTGALCVAGHSQKAPIPQNVQPPSSATARQRRSASVHGVVIDPSQVSSVNFQ 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06263 961 ProSitePatterns ABC transporters family signature. 663 677 IPR017871 GO:0005524|GO:0016887
Vivi3g06263 961 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 515 761 IPR003439 GO:0005524
Vivi3g06263 961 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 490 859 IPR026082 GO:0016020|GO:0055085|GO:0140359
Vivi3g06263 961 CDD ABC_subfamily_A 515 749 - -
Vivi3g06263 961 SMART AAA_5 554 738 IPR003593 GO:0016887
Vivi3g06263 961 MobiDBLite consensus disorder prediction 923 941 - -
Vivi3g06263 961 Pfam ABC-2 family transporter protein 27 436 IPR013525 GO:0016020|GO:0140359
Vivi3g06263 961 Pfam ABC transporter 546 690 IPR003439 GO:0005524
Vivi3g06263 961 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 542 743 IPR027417 -
Vivi3g06263 961 MobiDBLite consensus disorder prediction 923 943 - -
Vivi3g06263 961 Gene3D - 504 761 IPR027417 -
Vivi3g06263 961 FunFam ABC transporter A family member 2 505 769 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06263 Vivi-Chr3 164301594 164309800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06263 558 760 Calmodulin-binding Proteins AT2G36910 23.474 1.04e-08 57.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g06263 3 164301594 164309800 Vivi3g06263 3 164301594 164309800 ECH