Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06261 ATGAGAAATAGAAACAGACCCAACGAACCCGCCAGCTTCTGGATTCAAGCAAACGCGCTTCTCAGAAAGAACTTAACCTTCCAGAAACGAAATGTGAAGACAAACATTAGGTTAATCTTGTTCCCATTTGGCTTATGTATATTGCTCGTTCTACTTCAAAATCTGCTCAATAATCAATTTGATAAAGCTAAATTCAAGTGTGGATGCATTTGTACCAACACACAAGGGGAACAATGCTTGGACAATCAATGCGGGGTTCAATTTTCGGATTTTGATCAAGTTGGTGCTTGTCCTATTGCTAACCCTATTGAATGGACTCCATTGTTGCAAATCCCTGATCCGCGATACCGCGCTGTTAGAACGGATTTTCTTCCGTTTTCGGATTTTCCGAACCCCTTGTGCAGAACCAATGGTTCATGTCCCATTACTATGCTCTTTACTGGAACTAATCAGTCTTTTGGAGAAGTCTTGTCAGGGAATATGATCCCAAGTACTTTTGATATAAATAGCAACAATGTTATGGATAGTTTGGCAACAAATGTCATGGGATCAGCATCAGAAACAGAGAACACCAATTTTCTGGAGCCTGCTTTCTTTTCAGATCTTCCCATTTACTATCTACAAAGTCAGTGCAATAAGAATTCTTCATTCTCCATTCCTATTCAGATATCAACCACTAGCATACAACAAGAGTTAAGATGTGCTCAGGCTTTACGGTTATGGCGTAATAGTTCTTCTGAGGTAAACAATGAGCTATATAAAGGTTATAGAAAAGGTAACACAGAGAGGCAGATCAATGAGATAGCTGCAGGTTATGACTTCCTAAATTCAAATGAGAATGTACTTAATGTCAGTATATGGTACAACTCAACCTATAAAAATGACACTGGCTTTGATCTTATTGCATTGGCACGGATTCCTCGTTCTGTAAATTTGGTATCAAATGCCTACCTTCAGTTTCTGCTGGGACCAGGTACCCAAATGTTGTTTGAGTTTGTAAAAGAAATGCCAAAACCTAAGACCCCAATTAAGTTTGATTTGGCTTCTCTTTTGGGCGGTCTCTTCTTTACATGGGTTATCCTGCAACTTTTCCCTGTTGTCCTCACATCATTAGTTTATGAGAAGCAACAAAATTTAAGAATCATGATGAAAATGCATGGTCTCGGTGATGGGCCATATTGGATGATTTCTTATAGTTATTTTCTTGCCATATCAATTATCTACATGCTGTGTTTTGTGATATTTGGCTCAGTCATTGGATTAAAGTTCTTCACAATGAATGACTACAGCATCCAATTCATGTTTTATTTCATCTATATAAATTTACAAATTTCCCTTGCATTTTTATTGGCCTCCCTGTTTTCAAATGTTAAGACCGCCACAGTGATTTCATATATAGGTGTTTTTGGAACAGGGTTATTATCTGGTTTTCTTTTCCAATTTTTTGTTCAAGATAACTCGTTTCCAAGAGGGTGGATCATTGTTATGGAGTTATATCCTGGGTTTGCTTTATATCGTGGGTTATATGAATTTTCACAAGCTTCTTTTAGTGGTGATACTTTGGGGACTCATGGTATGCGGTGGGGAGATCTCAGTGATAGCACAAATGGCATGAAAGAGGTCTTGATCATTATGTTAGTGGAGTGGATATTGGTTCTATTCTTCGCTTATTACGTCGATCAAGTTTTGACAACAGGAAGTTGGAGAAGTTCTCTTCTGCTCTTGAAAAGATTTCAGAAAAAACCTAGTTCATCTTTTCGGAAGCCTAGTATTCAAAGGCAAGGATCTAAGGTTTTTGTTATGACTGAGAAACCAGATATTCATCAAGAGACGGAGAAGGTGGAGCAGCTGCTACTTGAACCAACTGTGAATCATGCAATTGTTTGTGACAAGCTAAGAAAGGTTTATCAAGGGAGGGATGGTAACCCAGAGAAATTTGCAGTGAAAGAGTTATCGCTTGCTTTGCCTCAAGGGGAATGCTTTGGCATGCTTGGTCCCAATGGAGCTGGGAAGACTTCTTTTATCAACATGATGATAGGTCTGGCGAAACCAACCTCAGGTACAGCTTTTGTTCAAGGTCTTGACATAAGAACTGACATGAATGGAATATATACAAGCATGGGTGTATGCCCCCAGCATGACTTGCTGTGGGAAATCTTGACAGGAAGAGAACACCTACTCTTTTATGGAAGACTTAAAAATCTTAAAGGTTCTGCTTTAACACAAGCAGTTGAAGATTCTTTGAAAAGTGTAAACCTTTTTCATGGAGGGGTTGCTGATAAAAAAGCTGGAAAATATAGTGGAGGAATGAAGAGGAGACTTAGTGTTGCAATTTCATTAATTGGAGATCCTAGAGTTGTTTATATGGATGAGCCAAGTACTGGATTAGACCCTGCATCAAGAAAGAACTTATGGAATATTGTTAAGCGTGCAAAACAGGACCGTGCAATCATTCTCACCACACATTCCATGGAAGAGGCAGAAGTCCTATGTGATCGATTAGGAATATTTGTAGATGGTAGCTTTCAGTGCATAGGAAATCCAAAGGAGCTGAAAGGAAGATATGGAGGAACTTATGTATTCTCAATGGCAACATCTGTTGATCATGAAACAGATGTTGAGAAATTGGTGCAACAACTCTCCCCAAATGCTAAGAAGATTTATCATATCTCAGGTACCCAAAAGTTTGAGTTGCCAAAAGATGAGGTTAGAATAGCTGATGTATTTCAAGCTGTTGAAACTGCAAAGACAAACTTCACAGTTTCTGCGTGGGGTTTAGCTGACACCACATTGGAAGATGTCTTCATCAAGGTTGCACGCGAGGCTCAGCAATACGACACTTTATCATAA 2850 0.3895 MRNRNRPNEPASFWIQANALLRKNLTFQKRNVKTNIRLILFPFGLCILLVLLQNLLNNQFDKAKFKCGCICTNTQGEQCLDNQCGVQFSDFDQVGACPIANPIEWTPLLQIPDPRYRAVRTDFLPFSDFPNPLCRTNGSCPITMLFTGTNQSFGEVLSGNMIPSTFDINSNNVMDSLATNVMGSASETENTNFLEPAFFSDLPIYYLQSQCNKNSSFSIPIQISTTSIQQELRCAQALRLWRNSSSEVNNELYKGYRKGNTERQINEIAAGYDFLNSNENVLNVSIWYNSTYKNDTGFDLIALARIPRSVNLVSNAYLQFLLGPGTQMLFEFVKEMPKPKTPIKFDLASLLGGLFFTWVILQLFPVVLTSLVYEKQQNLRIMMKMHGLGDGPYWMISYSYFLAISIIYMLCFVIFGSVIGLKFFTMNDYSIQFMFYFIYINLQISLAFLLASLFSNVKTATVISYIGVFGTGLLSGFLFQFFVQDNSFPRGWIIVMELYPGFALYRGLYEFSQASFSGDTLGTHGMRWGDLSDSTNGMKEVLIIMLVEWILVLFFAYYVDQVLTTGSWRSSLLLLKRFQKKPSSSFRKPSIQRQGSKVFVMTEKPDIHQETEKVEQLLLEPTVNHAIVCDKLRKVYQGRDGNPEKFAVKELSLALPQGECFGMLGPNGAGKTSFINMMIGLAKPTSGTAFVQGLDIRTDMNGIYTSMGVCPQHDLLWEILTGREHLLFYGRLKNLKGSALTQAVEDSLKSVNLFHGGVADKKAGKYSGGMKRRLSVAISLIGDPRVVYMDEPSTGLDPASRKNLWNIVKRAKQDRAIILTTHSMEEAEVLCDRLGIFVDGSFQCIGNPKELKGRYGGTYVFSMATSVDHETDVEKLVQQLSPNAKKIYHISGTQKFELPKDEVRIADVFQAVETAKTNFTVSAWGLADTTLEDVFIKVAREAQQYDTLS 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06261 949 Gene3D - 619 893 IPR027417 -
Vivi3g06261 949 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 592 944 IPR026082 GO:0016020|GO:0055085|GO:0140359
Vivi3g06261 949 FunFam ABC transporter A family member 7 616 892 - -
Vivi3g06261 949 Pfam ABC transporter 649 793 IPR003439 GO:0005524
Vivi3g06261 949 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 626 855 IPR027417 -
Vivi3g06261 949 CDD ABC_subfamily_A 631 852 - -
Vivi3g06261 949 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 630 864 IPR003439 GO:0005524
Vivi3g06261 949 Pfam ABC-2 family transporter protein 278 557 IPR013525 GO:0016020|GO:0140359
Vivi3g06261 949 SMART AAA_5 657 840 IPR003593 GO:0016887
Vivi3g06261 949 ProSitePatterns ABC transporters family signature. 766 780 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06261 Vivi-Chr3 164210190 164221743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06261 600 871 Calmodulin-binding Proteins AT2G36910 22.064 3.53e-11 65.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g06261 3 164210190 164221743 Vivi3g06261 3 164210190 164221743 ECH