Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06248 ATGGCTGCAGCTTTGGTGGGAGGTGCTTTTCTCTCTGCAACGATTCAAACCTTAGTTGAGAAACTTGCTTCTAAAGAGTTTATTGATTACATCACAAACACCAAGATAAATATCTCACTCTTGAGGCAGTTACAAACAATATTACTCACTCTTCAGGCTGTGCTGGATGATGCTGAACACAAGCAGATCAACAACCTTGCTGTCAAACAATGGCTTGATGACTTGAAAGATACAGTCTTTGATGCTGAGGATTTGCTCAACCAAATTACCTATGATTCTCTGAGATCCAAGATTGAGAATACACAAGCTTCAAACAAAACTCATCAGGTGTGGAACTTCCTTTCATCTCCTTTTAAAAACTTGTACGGAGAGATCAATTCCCAAATGAAGATCATGTGTGAAAACCTACAACTTTTTGCACAGCATAAAGATATACACTGTTTGCAAACTCAGAGTTCTAGAGTTTCTCATAGAACACCTTCAAGTTCAAGGGTTAATGAATCTTTCATGGTGGGTAGGAATGATGAGAAGGAAAGACTAATCAGTACGCTGATATCAGACAGTGGCACCAGCAGGCATAATAATTTAGGCGTTGTTGCAATTTTGGGAATGGGAGGTGTCGGTAAAACGACCCTCGCACAACTTGTTTACAATGATATAAAAGTTGAACAACATTTTGATCTCAAAGCATGGATTTGTGTATCCGAGGATTTCAATGTTGTCAGAATAACAAAGTCTCTCCTTGAATGTGTTAGAAATACAACATCCGTTCATTCAAATGTACGGGAAAGTGATAGTCTTGACATTCTTCAAGTTGAATTGATGAAACATTTGATGAATAAAAGATTTTTGTTTGTGTTGGACGACATATGGAATGACAGTTATATTGATTGGGATGAGTTGATAACACCCTTGACTAATCGAGAAGCTGGAAGCAAGGTGATCATAACAACACGTGAACAAAAAGTTGCAGAGGTCGCACGCACATTTCCAATTCAGAAATTAGAACCTCTTTCCGATGAAGACTGTTGGTCTTTACTCTCAAAGCATGCATTTGGCATTGAAAACCACGTTCGCAATAAACACCAAAACCTAGAAGAAATTAGCAGGAAGATTGCTAGAAAATGTGGTGGATTGCCAATAGCTGCCAAAACACTTGGAGGACTTATGCGTTCAAAGGTGGCTGAAAAGGAGTGGACTTCAATTCTGAACAGCGACATATGGAACTTACGAAATGATGCAATTTTGCCTGCTCTGCATTTGAGTTATCAATATCTTCCTTCTCATTTGAAAAGATGTTTTGCTTATTGTTCTATTTTTCCAAAGGATTACCCACTTGATAGGAAAAAATTGGTTTTGTTATGGATGGCTGAAGGCTTCTTTGATTATTTTCAAGGCGAAAAAGCGGCAGAGGAAGTCGGCGATGATTGTTTTTCTGAATTGTTATCTAGATCATTAATTCAACAAATAAATGATGATGCTCGTGGAGAAAAGTTTGTCATGCATGATCTTGTTAACGATTTAGCTTCATTCGTATCAGGAAAAAGTTGTTGTAGGCTTGAAAGTGGATACATCTCTAAAAATGTTCGCCATTTGTCATATAACCAAGAAGAGTATGACATTTTCATGAAGTTTGAGAATTTCTACAATTTCAAATGCTTGCGGAGCTTCCTACCCATTTACTTCTTACCCAATTACTTATGGAGAGCACAAAACTACTTATCCCTCAAGGTGGTTGATGATTTAATTCCCACACTCAAAAGGTTGCGCATGTTATCGCTATCAACTTATAGAAACATCACGAAGTTGCCAGATTCGATTGGCAATTTGGTGCAGTTGCGGTATCTGGATCTCTCCTTCACAAGAATCAAAAGCTTGCCTGATACTACATGTAACCTTTACAATTTGCAAACCTTGCTTTTATTTGGTTGTTGTGATCTCACTGAATTGCCACCGAAAATGGGAAATTTAATAAATTTACGCCATCTTGATATAAGTGGGACTGATATAAAGGTGTTGCCCACAGAAATTGGTGGACTAGAAAACCTTCAAACTCTAACTGTTTTTGTAGTGGGGAAGGGACAAATAGGGTTAGGTATCAAAGAGCTTAAGAAATTCTCACACCTACAAGGAAAACTTACCATCAAGAACCTGCATAATGTCATTGATGCCAAGGATGCACACTATGCCAACCTGAAAAACAAAGAGCGGATTGAAGAGTTAGAACTGCAATGGGGAAAACATAGTGAAGACTCACTGAATGTGAAAGTTGTACTTGATATGTTGCAACCGCCAATGAAACTGAAGAGCCTTAAAATTGACTTGTATGGTGGGACAAGCTTTCCGAGATGGTTGGGAGATTCTTCATTTTCTAACATGGTGTCCCTTTGCATCAGTAATTGTGAATATTGTGTGACACTTCCATCGCTGGGGCAGCTACCTTCTCTCAAAGACCTTGAAATATTTGGTATGAAAATGTTAGAGACAATTGGTCTAGAATTCTACTGTGTCCAGGCAAGAGAATGTTCCAATTCTTCTTTCCAGCCATTCCCATCCCTTGAATGTATTAAAATTCATGACATGCCAAACTTGAAGGTATGGCTTCCCTTTGAAGGAAACAATTTTGCTTTTCCTCGTCTTAGAACTTTGAAGTTATATGCTTGTCATGAACTTAGGAGACATTTGCCAAGTCAACTTTCTTCGATAGAAGAAATTGAAATAAAAGGATGTCCTCGTCTATTGGAAACACCACCTACATTGCATTGGCTATCATCAATAAAGATAATGAAAATAAAAAGATATTCAGATTCCCAACGGACGTTGCTTGAGAGTGATTCTCCATGTCTTCTACAACATGTAAGGATCAATTGCTTTTACGGTATATTTTCTTTGCCTAAAATGATTCTGAGCAGTACTTGTCTTCAACACTTGGAACTCTATACTATTCAGACTCCCTTAGCATTTCCGATAAATGGCCTACCCACTTCGTTGCGGTCACTTGATATTGTTAGATGTAGGAGGTTGACATTCATGCCTGCTGAAACGTGGAGCAATTACACATCACTTGAGAGTTTGTGGTTACGTAGTAGTTGTAATGCACTTAAATCATTCACACTTAATGGTTTCCCTGCCCTCCAGAGACTTAACATTATTGATTGTACGAACCTAGATTCCATTTGTATGTTAGAAAGTCCTTCACACCATCCTTCAAGCCTCCGATCACTTACAATCATATGCCATGACTCAATTGAATCACTTAAAGTCAATCTTCGGATGGACACGCTCACTGCTCTTGAAGAGCTGTCTCTTCAATGTGCAAAGTTGTCATTTCGTGAAGTTGTTTGCCTACCTCCCAAATTACAAACACTTAAGATTCGGTCCCAAAGAACAACTCCGCCTGAAACGGAATGGGGTCTCCAAGGCCTCACTTCTCTTTCAAGCTTGAGTATTGGAGGTTGTGACGATATTGTTAACACCTTGTTAAAGAAGTCGCTGCTACCCACCTCCATTGTGTCTCTCACTATCACGTATCTCTATGAAATGAAGTCCTTTGAAGGAAATGGGCTACAGCACTTCTCCTCTCTCGAAAATCTCCACTTTCGTAACTGTCAACAGCTTGTTTCGATTTCAGAAAACTGTCTCCCTTTGTCGCTAAAATATCTTCAATTATGGAGTTGTGAAAGACTTGAAACATTACCAGAAGAAAGCTTCCCTGACTCTCTTAAGCGGCTGGTCATTTGTCAATGTCCTGTATTACAAGAAAGGTATAAAAGGCAGGAGCATTGGTCCAAAATCACCCACATCCCTGTCATACAAATAGAAGCCCAAGTCACAATATGA 3840 0.3888 MAAALVGGAFLSATIQTLVEKLASKEFIDYITNTKINISLLRQLQTILLTLQAVLDDAEHKQINNLAVKQWLDDLKDTVFDAEDLLNQITYDSLRSKIENTQASNKTHQVWNFLSSPFKNLYGEINSQMKIMCENLQLFAQHKDIHCLQTQSSRVSHRTPSSSRVNESFMVGRNDEKERLISTLISDSGTSRHNNLGVVAILGMGGVGKTTLAQLVYNDIKVEQHFDLKAWICVSEDFNVVRITKSLLECVRNTTSVHSNVRESDSLDILQVELMKHLMNKRFLFVLDDIWNDSYIDWDELITPLTNREAGSKVIITTREQKVAEVARTFPIQKLEPLSDEDCWSLLSKHAFGIENHVRNKHQNLEEISRKIARKCGGLPIAAKTLGGLMRSKVAEKEWTSILNSDIWNLRNDAILPALHLSYQYLPSHLKRCFAYCSIFPKDYPLDRKKLVLLWMAEGFFDYFQGEKAAEEVGDDCFSELLSRSLIQQINDDARGEKFVMHDLVNDLASFVSGKSCCRLESGYISKNVRHLSYNQEEYDIFMKFENFYNFKCLRSFLPIYFLPNYLWRAQNYLSLKVVDDLIPTLKRLRMLSLSTYRNITKLPDSIGNLVQLRYLDLSFTRIKSLPDTTCNLYNLQTLLLFGCCDLTELPPKMGNLINLRHLDISGTDIKVLPTEIGGLENLQTLTVFVVGKGQIGLGIKELKKFSHLQGKLTIKNLHNVIDAKDAHYANLKNKERIEELELQWGKHSEDSLNVKVVLDMLQPPMKLKSLKIDLYGGTSFPRWLGDSSFSNMVSLCISNCEYCVTLPSLGQLPSLKDLEIFGMKMLETIGLEFYCVQARECSNSSFQPFPSLECIKIHDMPNLKVWLPFEGNNFAFPRLRTLKLYACHELRRHLPSQLSSIEEIEIKGCPRLLETPPTLHWLSSIKIMKIKRYSDSQRTLLESDSPCLLQHVRINCFYGIFSLPKMILSSTCLQHLELYTIQTPLAFPINGLPTSLRSLDIVRCRRLTFMPAETWSNYTSLESLWLRSSCNALKSFTLNGFPALQRLNIIDCTNLDSICMLESPSHHPSSLRSLTIICHDSIESLKVNLRMDTLTALEELSLQCAKLSFREVVCLPPKLQTLKIRSQRTTPPETEWGLQGLTSLSSLSIGGCDDIVNTLLKKSLLPTSIVSLTITYLYEMKSFEGNGLQHFSSLENLHFRNCQQLVSISENCLPLSLKYLQLWSCERLETLPEESFPDSLKRLVICQCPVLQERYKRQEHWSKITHIPVIQIEAQVTI 1279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06248 1279 SUPERFAMILY L domain-like 500 941 - -
Vivi3g06248 1279 Coils Coil 41 61 - -
Vivi3g06248 1279 PANTHER DISEASE RESISTANCE PROTEIN RP 51 910 IPR044974 GO:0006952
Vivi3g06248 1279 Gene3D - 151 330 IPR027417 -
Vivi3g06248 1279 Gene3D - 337 421 IPR042197 -
Vivi3g06248 1279 FunFam Probable disease resistance protein At1g63360 423 511 - -
Vivi3g06248 1279 Pfam Rx N-terminal domain 10 103 IPR041118 -
Vivi3g06248 1279 SMART LRR_typ_2 657 680 IPR003591 -
Vivi3g06248 1279 SMART LRR_typ_2 610 633 IPR003591 -
Vivi3g06248 1279 SUPERFAMILY L domain-like 944 1250 - -
Vivi3g06248 1279 PRINTS Disease resistance protein signature 376 390 - -
Vivi3g06248 1279 PRINTS Disease resistance protein signature 897 913 - -
Vivi3g06248 1279 PRINTS Disease resistance protein signature 277 291 - -
Vivi3g06248 1279 PRINTS Disease resistance protein signature 198 213 - -
Vivi3g06248 1279 ProSiteProfiles Leucine-rich repeat profile. 612 633 IPR001611 GO:0005515
Vivi3g06248 1279 FunFam Probable disease resistance protein At1g61300 152 329 - -
Vivi3g06248 1279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 437 IPR027417 -
Vivi3g06248 1279 Gene3D Ribonuclease Inhibitor 510 691 IPR032675 -
Vivi3g06248 1279 Gene3D - 15 131 - -
Vivi3g06248 1279 Gene3D Ribonuclease Inhibitor 902 1091 IPR032675 -
Vivi3g06248 1279 Gene3D Ribonuclease Inhibitor 1092 1267 IPR032675 -
Vivi3g06248 1279 Gene3D Ribonuclease Inhibitor 699 901 IPR032675 -
Vivi3g06248 1279 Pfam NB-ARC domain 192 404 IPR002182 GO:0043531
Vivi3g06248 1279 Gene3D - 422 509 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06248 Vivi-Chr3 163027868 163032131 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06248 199 700 WRKY Transcription Factor Family AT5G45050 23.643 5.36e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06248 - - tpra:123915821 1635.16