Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06234 ATGGTGAGGTCTGCAAGTTGTGAAAAAAATAGTGTGGTCAAAAGGGGTGTATGGATCACAGAAGACGATGGATCTGGTAATTGGAATTCTGTCCCCAAAAAAACAGGTATAAAGAGGTGTGGAAAAAGTTGCAGACTTAGGTGGAGTAACAACGTGGTTGATGATAAGTTATTCACATCCGAAGAAGAAGATCTTATAGTTAAGCTTCATGCTGCCATAGGTAGTAGGTGGTCTATCATAGCACAACAACTTCCTGGAAGAACAGACAATGATGTAAAGAACAACTGGAATACAAAGTTGAAAAAGAAACTGTCTCAAATGGGGATAGATCCTGTTACACACAAGCCCTTTTCTAAACTAATTGCTGACTATGGAAACATAGGTGCTAAACAAGACTTCCAGAATGCCAATCTTTCACACTTCCAAACCATTCCAATAACAAAAATAAAGAATAAGGCAAATAATGTTGCACCATTTAGTTGGAATGACTTTCTTATACAAGATGCGTTTGCACCACCACTTACTAATAACCAAGATCAAGCGTTATTTTCAAAGGATATTGTGGTGACCAAACTACAATTACAGAAAAACAAAGAGGTGGTATCATCATCATCGTCTTCGTCAGACACTTCATTTGTAGAAGCAATACTCTATCAAGAAAATGAGATGTTTCTGAGCTTCCCCGAACTTTTGGAGGAACCATCACATTACTGA 714 0.3782 MVRSASCEKNSVVKRGVWITEDDGSGNWNSVPKKTGIKRCGKSCRLRWSNNVVDDKLFTSEEEDLIVKLHAAIGSRWSIIAQQLPGRTDNDVKNNWNTKLKKKLSQMGIDPVTHKPFSKLIADYGNIGAKQDFQNANLSHFQTIPITKIKNKANNVAPFSWNDFLIQDAFAPPLTNNQDQALFSKDIVVTKLQLQKNKEVVSSSSSSSDTSFVEAILYQENEMFLSFPELLEEPSHY 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06234 237 ProSiteProfiles Myb-like domain profile. 58 100 IPR001005 -
Vivi3g06234 237 FunFam Os07g0634900 protein 57 116 - -
Vivi3g06234 237 PANTHER F14D16.11-RELATED 143 237 - -
Vivi3g06234 237 SMART sant 54 102 IPR001005 -
Vivi3g06234 237 Pfam Myb-like DNA-binding domain 58 98 IPR001005 -
Vivi3g06234 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 104 IPR017930 -
Vivi3g06234 237 SUPERFAMILY Homeodomain-like 15 96 IPR009057 -
Vivi3g06234 237 CDD SANT 58 100 IPR001005 -
Vivi3g06234 237 Gene3D - 12 56 - -
Vivi3g06234 237 Gene3D - 57 118 - -
Vivi3g06234 237 ProSiteProfiles Myb-like domain profile. 24 52 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06234 Vivi-Chr3 161845719 161847159 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06234 1 123 MYB Transcription Factor Family AT5G56110 58.088 1.14e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi3g06234 Myb_DNA-binding 6.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06234 K09422 - gmx:100795381 204.142