Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06233 ATGGAAAACACCGACCATTATGATTCCAACGACTATCGATGCCGTGATAGTGGTACATATGATTCTGAATCGGACAATGGTCAGGATGACAGTAATTCGGTGTCCAGTGCGTACCAAGGTTCAAGTGATGGTGATGGCGATGGTGATAGTCACAATGAAAATTTTGTTGAATTTGATGCAGTTGTAGGTGATAGAACAGTGAAAATTGATGCCCTTACTGCTGATGAAATTCGTGCTATGGAATTCGGTACAGTTGATGAAGCTAATGTGTTTTATTTTAAGTATGCTAAATGTAAAGGGTTTGCCATTAGGAAAAGTGATGTTAGGACAAGATCGACTGAGGGTGGACAAACAATTGTAATGAGGCAGTTTGTATGCAATAAACGCGGTCTAAGAGATGCAAAAAACTTAAGGAGGCTTGATAGAAAAAGAGAACACAGACCTACGACCCGCACTAATTGTCCCGCTAGGCTTCGTGTGCATTACAAGCCCCAGAAGGATAGTTATGTAGTGTCATGTTTTGAAGAGGCTCACAACCATGAGTTAACACCATCTAGGTTTATCCACTTACACCCCATTTATCGTGAGATTACTGAAGCAGATAGAGCTCAAATTGACGGTCTACAGTCAAATGGAATTAGAACTTGTCATATAATGGGGTACATGGTTGCTCAGAAGGGTGGATACAATCGTGTTGGGTTTACAAAGAAGGATCTGTACAATTATTTTGATAGTAAAATGCGTGCTACTATTAAAGATGGTGACGTTGCTGCTGCTATAAATTATCTAAATGTGAAGTCATCTACTGATCCCATGTTATATGGTAAATATGCCGTAGGCATGGATGGACGAATGAAGTCTCTTTTTTGGGCTGATGGAAGCAGTAGATCTGACTATTTTTGTTTTGGCGATGTGGTTGTGTTCGACACGACTTACAAGAAGAACAAATACAACTACCCATTGGTTATATTTTCAGGGTGTAACCACCACTCTCATACAGCTATTTTTGGTGTTGCATTGGTGTCAGATGAAACGACAGAGACGTATAAGTGGTTGTTGGAGTGTTTTTTAGAGTGCATGGAAAATAAATACCCAGAAGTAGTTGTAACAGACAGAGATAGGGCGATGAGGGAATCTATAAAACAAGTGTTTCCGGATGCGACACATTGTTTATGCGCTTGGCATTTGAACAAGAATGTGTGTGAGAATGTAAAGAACTCGGAATTTTTGAAAGATTTTCAAAAAGCCATGTACTCTAATTTTACAAAGGATCAATTTGAAGAGTTTTGGTCAAAAACAATTAAAGAAAACGGACTTGAAGGAAATCCTTGGGTTGCAAAAACGTACGAGAACAGGTCACTATTGGCAACTGCATATCTACGTGAGAAGTTTTTTGGATATATAAGAACTACGTCTCAATGTGAAGCCGTCAAAGCAATCATCAAGAGTTATGTCAGGAAGAAAGGCTGCATTTTTGAATTTATGCATAATTTTGAGCAGGCTATGAGATCTTATAGAAACAATGAACTGATTGCCAATTTTAAATCAAAGTTTTCAGAACCTGTGATGACTACTCAACTACGTGCCTTTGAGAGCCATGCTGCGAAAGTTTATACTACGGAGATTTTCAAGGAAGTCAGAGATGAAATAGTGAAGGCTGGATCATTGATTGTTAAGGAAAAGTTAATTCGCAATGGATTTAAGACTTATCAATTTACAAAATATTGTTGTGATAACTATGACGTAGAGGTTGTGTATGATGGTGAAACACTTCAATGTGAGTGTAGGTTATGGGATTCTCGTGGGATTCCATGTTCTCATATGTTTGGTGTCATGAAGGAAGAACATGTTAGTTTCATTCCCACCGGTTTGATTTTGTCAAGATGGACGAAGGATGCCAAAATTCAATACTTGAACATGAATTGTAATGATTTTGATGATTCTAATATGATTGAGCAAGCTCGGTTTGCTGCATATTGTTCTGCATTTACTGCTTTTTGCAAAGAAGCTTCAAAAAAGGAAGGCGTTTATGGGGAAATAATGGGTGACATTCTGAAGTTACAAAAAAAGTATTGCAGTACGGACGATCCTATTTTGGCATCGAACTCACCCGTAGGTGATCCAAAGATTATGAATAGCAAAGGTGCTCCAAAGAAAAAAAAGAATGACATAAAAGCTATTAGGCGATGTTCTAAATGCAACAGTAGAACTCATAATGCAAGGAGTTGTTCGAACAAGAATGGAAAAAGAGGTCACATTGGTGAAAGTAGTGTGCAAAATAAATGTACAGAACCACCGAACTCTCGTGGCGCTAATGTGACAGCGACTTCTCGCGCGGAAGTTGGAAGCACAAGCATACCCATGCCTGCAATGTATGGATTGCAACCCGTGTTGCCAGTGGTTGAACAGAATGTCGATCTCAGTGACATTGAAAGTGATGAAGGTGAAGAAGAGATGGATGAAAATTTCGGTGATCCCGCGGTCGAAGAAAATGGCTTTTCATTCAATTATCGTGTCACTGCTGCTTGTGTAAGAGGAAAGAATGTTTTCCACTTTCCATCTAATGTTGCTGACAATTGGTTATTGCCGTTGCAAACTGAGATAGACATTGTCGATGTTCATACCGATGTTGTTTACCCATGTGTGTTGAAGACTGGTAGGAGGCCAGGGGAGAGATATCTTTGCTTAGCTTGGTATGAGTATGTTAAAGCAACTCGTCTGAGGGCTGGTGATGTTCTTGAGTGCACTGTGGCAGATCCTCCTACAAGAATGTTTTTTCGTTTTATGATGTAA 2793 0.3928 MENTDHYDSNDYRCRDSGTYDSESDNGQDDSNSVSSAYQGSSDGDGDGDSHNENFVEFDAVVGDRTVKIDALTADEIRAMEFGTVDEANVFYFKYAKCKGFAIRKSDVRTRSTEGGQTIVMRQFVCNKRGLRDAKNLRRLDRKREHRPTTRTNCPARLRVHYKPQKDSYVVSCFEEAHNHELTPSRFIHLHPIYREITEADRAQIDGLQSNGIRTCHIMGYMVAQKGGYNRVGFTKKDLYNYFDSKMRATIKDGDVAAAINYLNVKSSTDPMLYGKYAVGMDGRMKSLFWADGSSRSDYFCFGDVVVFDTTYKKNKYNYPLVIFSGCNHHSHTAIFGVALVSDETTETYKWLLECFLECMENKYPEVVVTDRDRAMRESIKQVFPDATHCLCAWHLNKNVCENVKNSEFLKDFQKAMYSNFTKDQFEEFWSKTIKENGLEGNPWVAKTYENRSLLATAYLREKFFGYIRTTSQCEAVKAIIKSYVRKKGCIFEFMHNFEQAMRSYRNNELIANFKSKFSEPVMTTQLRAFESHAAKVYTTEIFKEVRDEIVKAGSLIVKEKLIRNGFKTYQFTKYCCDNYDVEVVYDGETLQCECRLWDSRGIPCSHMFGVMKEEHVSFIPTGLILSRWTKDAKIQYLNMNCNDFDDSNMIEQARFAAYCSAFTAFCKEASKKEGVYGEIMGDILKLQKKYCSTDDPILASNSPVGDPKIMNSKGAPKKKKNDIKAIRRCSKCNSRTHNARSCSNKNGKRGHIGESSVQNKCTEPPNSRGANVTATSRAEVGSTSIPMPAMYGLQPVLPVVEQNVDLSDIESDEGEEEMDENFGDPAVEENGFSFNYRVTAACVRGKNVFHFPSNVADNWLLPLQTEIDIVDVHTDVVYPCVLKTGRRPGERYLCLAWYEYVKATRLRAGDVLECTVADPPTRMFFRFMM 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06233 930 MobiDBLite consensus disorder prediction 1 53 - -
Vivi3g06233 930 MobiDBLite consensus disorder prediction 737 778 - -
Vivi3g06233 930 MobiDBLite consensus disorder prediction 703 723 - -
Vivi3g06233 930 PANTHER OS01G0519700 PROTEIN 77 758 - -
Vivi3g06233 930 MobiDBLite consensus disorder prediction 1 22 - -
Vivi3g06233 930 SMART 26again6 591 618 IPR006564 GO:0008270
Vivi3g06233 930 SUPERFAMILY DNA-binding pseudobarrel domain 833 928 IPR015300 -
Vivi3g06233 930 ProSiteProfiles Zinc finger SWIM-type profile. 580 616 IPR007527 GO:0008270
Vivi3g06233 930 Pfam MULE transposase domain 305 399 IPR018289 -
Vivi3g06233 930 MobiDBLite consensus disorder prediction 24 45 - -
Vivi3g06233 930 Pfam SWIM zinc finger 583 610 IPR007527 GO:0008270
Vivi3g06233 930 Pfam FAR1 DNA-binding domain 91 183 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06233 Vivi-Chr3 161792070 161795938 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi3g06233 MULE 2e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06233 - - vvo:131620026 1625.53