Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06211 ATGGGAAGTTCTTGTACAAAACCAGTTGCTCACGTTTCTTCCTCAAATATTTCTGGAAGTAAGAAGCCTCAAAGCAGGACAAATCCGTATTCAAATTCTTCTTTGCAAACTAGGGAGCAAAATGTTGATCCATCAATATCCAGTAAGCTTAAGTCATTCAGCTTGATTGATCTGAAGGAGGCTACTAAGAATTTCCGGCGAGAGAATTTAATCGGAGAGGGAGGGTTTGGGCGTATCTTCAAGGGATGGATTGATGAAAACACGTATATTCCAACAAAACCAGGGAGTGGAATTGTGGTGGCCATTAAGAATCTCAAGCCAGAAAGCTTTCAAGGTCACAAGGAATGGCTGGCAGAAGTTAATTATCTAGGGCAGCTTCACCATGAAAATCTTGTGAAACTCATTGGTTATTGCTTGCAAGGAAAAAACAGGCTTCTAGTTTATGAGTTTATGCAAAAAGGAAGTTTGGAAAATCATTTATTCAGAAAAAATGTTCAACCTATTGCGTGGCTAACGCGTGTCAACATTTCTGTTGGTGTTGCAAAAGGATTAGCATTCTTACATTCCTTAAATGCAAATGTTATCTTTCGTGATTTAAAGGCGTCCAATATCCTACTTGATTCAGATTTCAATGCAAAGCTTTCGGATTTCGGTTTGGCAAGAGATGGTCCTACAGGAGATAATACTCATGTTTCAACTAGAGTTATTGGAACTCAAGGTTATGCTGCTCCAGAGTATGTTGCTACAGGTCATTTGACACCAAGGAGTGATGTATACAGCTTCGGTGTTGTTTTGTTAGAGTTACTAACAGGAAAGTGTGCTGTAGAAGACGCGAGACCTGGACTTTCTGAAGAAACTCTGGTGGATTGGGCAATGCCTTTCTTAAATGATAGCAGAAGAGTTTTGAGAATCATGGACACAAGATTAGGTGGTCAGTACTCAAAGAAAGGAGCACAAGCTGCAGCTGCACTTGCATTACAATGTTTAAACTCAGATCCTAAATTTAGACCACCTATGGTAGATGTTGTTGCAACATTGGAAGGACTTCAATCATCAAATACATTCCAAAGGACACCAAAATATGCAACCAAACACTCTTCTCATTCCCTAACGTAA 1116 0.3961 MGSSCTKPVAHVSSSNISGSKKPQSRTNPYSNSSLQTREQNVDPSISSKLKSFSLIDLKEATKNFRRENLIGEGGFGRIFKGWIDENTYIPTKPGSGIVVAIKNLKPESFQGHKEWLAEVNYLGQLHHENLVKLIGYCLQGKNRLLVYEFMQKGSLENHLFRKNVQPIAWLTRVNISVGVAKGLAFLHSLNANVIFRDLKASNILLDSDFNAKLSDFGLARDGPTGDNTHVSTRVIGTQGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGKCAVEDARPGLSEETLVDWAMPFLNDSRRVLRIMDTRLGGQYSKKGAQAAAALALQCLNSDPKFRPPMVDVVATLEGLQSSNTFQRTPKYATKHSSHSLT 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06211 371 FunFam Serine/threonine-protein kinase BIK1 32 150 - -
Vivi3g06211 371 Gene3D Transferase(Phosphotransferase) domain 1 151 368 - -
Vivi3g06211 371 MobiDBLite consensus disorder prediction 1 43 - -
Vivi3g06211 371 SUPERFAMILY Protein kinase-like (PK-like) 39 355 IPR011009 -
Vivi3g06211 371 ProSiteProfiles Protein kinase domain profile. 65 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g06211 371 SMART serkin_6 65 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g06211 371 Pfam Protein tyrosine and serine/threonine kinase 68 346 IPR001245 GO:0004672|GO:0006468
Vivi3g06211 371 ProSitePatterns Protein kinases ATP-binding region signature. 71 103 IPR017441 GO:0005524
Vivi3g06211 371 PANTHER OS01G0588500 PROTEIN-RELATED 32 350 - -
Vivi3g06211 371 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 151 360 - -
Vivi3g06211 371 CDD STKc_IRAK 71 349 - -
Vivi3g06211 371 Gene3D Phosphorylase Kinase; domain 1 39 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06211 Vivi-Chr3 160269595 160271641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06211 22 346 Glycoside Hydrolase AT3G07070 47.289 3.85e-100 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi3g06211 PK_Tyr_Ser-Thr 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06211 - - gmx:100800654 591.652