Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06188 ATGTCAAGGAGAGCGACATATTGGTGTCATACATGCCAGCAAGCAATCTTGCTTGCAGGGAGGGATGTCCTTTGCCCTTACTGCGACGGAGGATTTGTGCAAGAAATTAACGAGATGCGAGGACTTGTATCCTCGTCACAGTGGGAAGAGTTTCAAGATAATCCTGATATTTTGGATGCTATACATGCTGTTGTAAGTCAAAGAGGTTCTTTACCAAGAATTGGATTTAGAGATGCTGTTGATATTTACATGAGGCAGAGATTGGGTGGAAGAAACACAAACTTTGATGATAGAAGAAGATCTGTTCCTGAACATACTTGGGATGTTTTAACTTCATCCGGTCGTTATTTACTATTTCATGATCAAGCACCTAACTCAAGAGGCGATCCTAGACATGTTGATTTTGGTGGCTACTTTATGGATCCTGGACTAGATGAACTTATGGAACAAATCAATACAACCGGGCGTGGTGGTCCAGCCCCCGCCTCACGTTCTTCGATTGAAGCAATGCCTACCATTAAGATAACTCAAGCTCATCTACACTCTGATTCACATTGTTCAGTTTGTTTAGAAAGGTTTGAACTCGGGTCTAAGGCAAGGGAAATGCCATGTAAACATATTTACCACTCGGATTGCATTGTTCCGTGGTTAATTCAGCATAATTCGTGTCCTGTTTGCCGTGATGAGCTGCCACCTCATGGACGTCCTAGTCGAAATTGGGGAAGTAGCACTGGTCGTGGGAGGAGAAATCCACTTTCGTTTTTGTGGCCATTTCGTTCTTCCAGGTCAAATCCTAGTCATTGA 804 0.4328 MSRRATYWCHTCQQAILLAGRDVLCPYCDGGFVQEINEMRGLVSSSQWEEFQDNPDILDAIHAVVSQRGSLPRIGFRDAVDIYMRQRLGGRNTNFDDRRRSVPEHTWDVLTSSGRYLLFHDQAPNSRGDPRHVDFGGYFMDPGLDELMEQINTTGRGGPAPASRSSIEAMPTIKITQAHLHSDSHCSVCLERFELGSKAREMPCKHIYHSDCIVPWLIQHNSCPVCRDELPPHGRPSRNWGSSTGRGRRNPLSFLWPFRSSRSNPSH 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06188 267 FunFam E3 ubiquitin-protein ligase RING1-like 148 233 - -
Vivi3g06188 267 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Vivi3g06188 267 SUPERFAMILY RING/U-box 166 233 - -
Vivi3g06188 267 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 116 231 - -
Vivi3g06188 267 SMART ring_2 186 226 IPR001841 -
Vivi3g06188 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 233 IPR013083 -
Vivi3g06188 267 CDD RING-H2_RNF126-like 186 227 - -
Vivi3g06188 267 Pfam Ring finger domain 185 227 IPR001841 -
Vivi3g06188 267 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06188 Vivi-Chr3 158289607 158291926 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06188 130 231 C3H Transcription Factor Family AT5G01980 41.346 1.24e-22 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06188 K11982 - vvo:131656833 573.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g06188 3 158289607 158291926 Vivi7g02982 7 94496969 94499188 PCT