Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06129 ATGGATCATGAATGTGGAGGAGAAGAAAACTTTCATCATAAGATTTCTGCTTTGTTTGAGTTTTCAGCCAAAGATGATGTAATAGCTTTCAAAGATGCGGTTGAAAAAGAGGGTTGTGATGTTGATGAAATAGGGTTCTGGTATGGAAGGAGTATTGGTTCAAATAAAATGAGTTATGAAGAGAGGACACCTCTTATGATTGCGTCCTTGTTTGGCAGCAAAGGTGTAGTGTCTTATATTCTCGGAACCGATCGTGTCGATGTCAACCGAGCATGTGGATCAGATAGGGCTACTGCTCTTCACTGTGCTGTATATGGCTGTTCTGCTGATTCTGTTAAGGTTATCCAGCTTTTGCTTGATGCATCTGCAGATATTAATTCTGTTGATGCCAATGGTAACCGGCCTAGTGACTTGATTGTCTACATGTCTAATAGTAAGTTCGGTTCAAGGAATATGACACTACAAGCATTACTAGATGATGTTGATGTTAGAGAAGCTTGCCTTAAGAAAACAGGTTTCCAAATGGGGAAGCAACAAGGTGTAGATCCACCACAAATCAAGAAGAAATATTATCCCTCTGATCTATCCCTACCAGACTTAAATAACGAGATCTATAGTACAGATGAATTTAGAATGTTTAGTTTCAAAGTGAAACCTTGTTTAAGGTCTTATCCACATGAATGGACCGAATGTCCCTTTGTTCATCCAAAGGAAAGCGCAAGGCGACGTGATCCGAGGAAATATTACTACACCTGTTTCCCTTGTCCCGAGTATCAGAAAGGATCATGCAGCAAAGGGGATGCATGTGAATATGCACATGGTATTTTTGAATGCAGGCTTCATCCTGCTCAATACAGAACAAAGCTTTGCAGTCACAAGGTTGGATGCACCAGAAAAGTTTGTTTCTTTGCTCACAAACCTGAGGAGCTTCGCCCAGTGTATGCTTCTACTGGCTCTGGTTTGCCTTTACCCACATCAAATTCATCTGGTGTTTCTCCAATTTACCCTTTCACAGTGAGCTCTGCGTCTGCTTTACAATCTGCATGGAAGCCACCTTTGACTCCATCTGTAGCATCATCACATGCTGCTGGAACTGAGTGGCTGACTCATGCTGCAGTCCCTACATTTCAGATGCCAAGGAGTAGTTTCAAAACTGCACTGAATGCTAGAGGTAATACTGAACTTCTCCAACTTGAAAATCTCTTTATGTGGAACCTAATGATTGAAGAGATGGCAAGTCTTTCATCCCCTTCAAATAGGCTCGCAGGAGGGAATCCTACCAACTTTGAAGGCATTTTCAGGTCGCAGATACCATCTCTAACATCAATGCAGGTGCATCAGAATAGGAACCAGCAACTTTGGGGCTATCCTGCTGATCTTATCAATTCAAATGTGATTGGATCACCACAACTTAGGGTTGATCCATCTTTGTATCCAAGATATGATGCCTTTTCGAAGCGGGGTCAGAGGGTATCCAGTTTTAATTCTGAGCTTCCTTCTACTTCTTCAGTTGCTATGGAGCTCCCTACCACCTTCCCTGGTTGGGGCTCCCCAGATGGAAAATTAGACTGGACCATCAGCAACGATGAACTGAATAAGATGAGAAAATCTTATTCCAGTTTTCAAAACTGA 1632 0.421 MDHECGGEENFHHKISALFEFSAKDDVIAFKDAVEKEGCDVDEIGFWYGRSIGSNKMSYEERTPLMIASLFGSKGVVSYILGTDRVDVNRACGSDRATALHCAVYGCSADSVKVIQLLLDASADINSVDANGNRPSDLIVYMSNSKFGSRNMTLQALLDDVDVREACLKKTGFQMGKQQGVDPPQIKKKYYPSDLSLPDLNNEIYSTDEFRMFSFKVKPCLRSYPHEWTECPFVHPKESARRRDPRKYYYTCFPCPEYQKGSCSKGDACEYAHGIFECRLHPAQYRTKLCSHKVGCTRKVCFFAHKPEELRPVYASTGSGLPLPTSNSSGVSPIYPFTVSSASALQSAWKPPLTPSVASSHAAGTEWLTHAAVPTFQMPRSSFKTALNARGNTELLQLENLFMWNLMIEEMASLSSPSNRLAGGNPTNFEGIFRSQIPSLTSMQVHQNRNQQLWGYPADLINSNVIGSPQLRVDPSLYPRYDAFSKRGQRVSSFNSELPSTSSVAMELPTTFPGWGSPDGKLDWTISNDELNKMRKSYSSFQN 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06129 543 Gene3D - 12 164 IPR036770 -
Vivi3g06129 543 ProSiteProfiles Zinc finger C3H1-type profile. 254 276 IPR000571 GO:0046872
Vivi3g06129 543 SMART ANK_2a 95 127 IPR002110 GO:0005515
Vivi3g06129 543 SMART ANK_2a 60 90 IPR002110 GO:0005515
Vivi3g06129 543 Pfam Ankyrin repeats (3 copies) 42 129 IPR002110 GO:0005515
Vivi3g06129 543 ProSiteProfiles Ankyrin repeat profile. 95 130 IPR002110 GO:0005515
Vivi3g06129 543 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 254 274 IPR000571 GO:0046872
Vivi3g06129 543 SUPERFAMILY Ankyrin repeat 19 145 IPR036770 -
Vivi3g06129 543 ProSiteProfiles Ankyrin repeat region circular profile. 95 129 - -
Vivi3g06129 543 Gene3D - 252 312 - -
Vivi3g06129 543 PANTHER UNKEMPT FAMILY MEMBER 20 539 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06129 Vivi-Chr3 154633453 154635640 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06129 11 543 C2H2 Transcription Factor Family AT5G12850 37.520 7.86e-123 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi3g06129 Ank_2 1.2e-06 CL0465