Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06124 ATGGCAAGACCTAGTGCAAATTTGAAGGAAATCAATGAAAGTAAGGAACTATGGAAAATCGCCGTCAGAATCCATCACAAATGGACAGTTTTGTCAAAGACCAGAGAGCACTTCGAATTGATTCTGGTTGATAAAGAGGGTACTGATATTCTCTACAGAGTACCAAGTGCGCTTAAACAGACTTATGATTCTATTTTAACAGTTAACAACACATATACCATCTCAAATTTCCAAGTTACTTTGAATGATCTTATGTTCAAGCCTTCCCAGCACAAATATACCTTAACTTTCACTGGTGGTACTTCTGTGTCTGACAAGAACAAACACGACATACCACAAAAAACACTTATCTTCACTCCTTTTGGTGATATCCTTACCGGCAAGGGGAATAGGGATGTGTTGATTGATATCATAGGAATCGTTGTGGAAATTGGATACACCCAGATTCACAATTCGAACAAAAAACAGCAGATCAATTTGGTCCTCAAGGATTTGGGAAACAACACCCTGAATTGTACATTATGGGGAAGTTTTGCGGTCCAATTTCATGATTTCAATAGTTCCAGAAAAGATTTCACAATACCAACGGAAAATGTTTCCAACACATTCAACATTACTAAATTGCACATCAACGATCATCTCCCTGAAATTCATAACTTCTTAAAAAGCATCCCAAAACTGCCAATGGGCGAAATATCATCCGAACGTATGGGTGCCATTTCACAACATTCACAACCAAGCGGTACTACTCACCTTAGCCCTTATGAAAATTTCATGTATAAGGCTACATTACTCCCTCTGCGCGATATTATTACTCAGTGTATAACCGTGGAAAAAACTTCCAGACTCAAGGTTGTACCTGGTGGATGGCATTACAAAGCTTGCGATGCTTGTACAATGGTTGCTAAAGGTATCAACCACCATATGTTTGTGGCAAAGGACACCGTACAGAGACTGAAATTTACCGGTAATACACCTTACAAGTGTAAAATTCTTATTGATGTTGTGCACGAAGGGTGTGAAACAACGTTTGTTCTATGGGACCGTGAATGTTTGCAGCTGTTGAAACTTACTTCGGCACAGATGCGCAACACCATGCTTGAGGCTGGGATATCTGACCCCCTTGAATTTCCTTTAGCACTTGACGCTTTGGTCGAACTAGATTTGGCATTTAAGGTCAAGTGGCAGCCTTCATGGAACAATACAACTGTCGTATCCATCTACAAAGATAAAACTGTGATCAAAGACCTAGAGAATTCAATGCCTAAACCTTTGGCACCGTCTACATCTTCTGCAACACCAAAGAAATTGCAGATTACTGAAAGTGTGAATGATGCTTTGCCAATTGACGATTGGAATATGGTTAATGACGTTGACGTAACTTGA 1386 0.3968 MARPSANLKEINESKELWKIAVRIHHKWTVLSKTREHFELILVDKEGTDILYRVPSALKQTYDSILTVNNTYTISNFQVTLNDLMFKPSQHKYTLTFTGGTSVSDKNKHDIPQKTLIFTPFGDILTGKGNRDVLIDIIGIVVEIGYTQIHNSNKKQQINLVLKDLGNNTLNCTLWGSFAVQFHDFNSSRKDFTIPTENVSNTFNITKLHINDHLPEIHNFLKSIPKLPMGEISSERMGAISQHSQPSGTTHLSPYENFMYKATLLPLRDIITQCITVEKTSRLKVVPGGWHYKACDACTMVAKGINHHMFVAKDTVQRLKFTGNTPYKCKILIDVVHEGCETTFVLWDRECLQLLKLTSAQMRNTMLEAGISDPLEFPLALDALVELDLAFKVKWQPSWNNTTVVSIYKDKTVIKDLENSMPKPLAPSTSSATPKKLQITESVNDALPIDDWNMVNDVDVT 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06124 461 Gene3D - 261 419 IPR012340 -
Vivi3g06124 461 SUPERFAMILY Nucleic acid-binding proteins 7 103 IPR012340 -
Vivi3g06124 461 Gene3D - 4 107 IPR012340 -
Vivi3g06124 461 CDD RPA1_DBD_B_like 136 223 - -
Vivi3g06124 461 Gene3D - 109 227 IPR012340 -
Vivi3g06124 461 CDD RPA1_DBD_A_like 19 103 - -
Vivi3g06124 461 SUPERFAMILY Nucleic acid-binding proteins 118 225 IPR012340 -
Vivi3g06124 461 Pfam Domain of unknown function DUF223 39 134 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06124 Vivi-Chr3 154449086 154452549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06124 1 179 Core DNA Replication Machinery Family AT5G08020 25.263 1.12e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06124 - - vvo:131659197 932.169