Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06108 ATGGCTGAACATAACATGCAAATTTCACTCTCAAGCTCCTCTAACGATTCCTCAGACCAAGAAACACCTTTCACCACCGCCATGAACCCAACAACCGACACCGGTGGTTCATCTCACCAACAAACACCAACTGATTCACCACAACCCTCCAGAAAGCCACGTGGCAGACCACCTGGTTCTAAAAACAAACCTAAACCACCTATTGTAATAACACAAGACAATGAACAAGCCATGAAACCTGCAATCATCGAAGTTGCTGCTGGTACTGATGTTCTTGAAGCTGTCATCCAGTTCGCTGTTCGTCTTGGTTCATGCCTCACCATTCTTAGCGGTTCTGGTACTGTTTCTGTTGCTACACTCCATTACCCAGTTTGTCAATCTCCTGCTTTTACTCTTCATGGACCTTTTTCTTTGTTGACTTTGACTGGGACTTTTTTCTTCCCTCCTTCACCACCACCACCTCCTCCTCTTCCCATTTCTCTTCCTATTGCTTCTTCTTCATCAAACCCTAACCCTAACCAGTTAGATCAACCACCAACACCTACTTCTACTTTTGGTATCACTCTTGCTGGTATGCAGGGACAAATCTTTGGTGGGATAATTGGTGGAAAAATTATTGCTGGTGGTAATGGTGTTAAGATTGTTGCTTCTTTGTTTAAAAATCCTGAACTTCATAGGGCTGCTGGTATTCTTTTGGAAGCTGATGATGATGATTTTGCCGATGATGATAATGGTGGTGGTAACGGTGGTGGTGATGCTGGTGCCGGTAGCAGTGGTGCTGCTGCTGAGAATGTGACTGGTTTCAATGTTCCACCACCACATTCTGATCCAAACTTCATGCCATGGAATCACCCTTCTCACCCTCGTCCTCCTAATTTCTGA 882 0.4478 MAEHNMQISLSSSSNDSSDQETPFTTAMNPTTDTGGSSHQQTPTDSPQPSRKPRGRPPGSKNKPKPPIVITQDNEQAMKPAIIEVAAGTDVLEAVIQFAVRLGSCLTILSGSGTVSVATLHYPVCQSPAFTLHGPFSLLTLTGTFFFPPSPPPPPPLPISLPIASSSSNPNPNQLDQPPTPTSTFGITLAGMQGQIFGGIIGGKIIAGGNGVKIVASLFKNPELHRAAGILLEADDDDFADDDNGGGNGGGDAGAGSSGAAAENVTGFNVPPPHSDPNFMPWNHPSHPRPPNF 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06108 293 CDD DUF296 82 145 IPR005175 -
Vivi3g06108 293 MobiDBLite consensus disorder prediction 162 181 - -
Vivi3g06108 293 MobiDBLite consensus disorder prediction 1 49 - -
Vivi3g06108 293 MobiDBLite consensus disorder prediction 239 293 - -
Vivi3g06108 293 MobiDBLite consensus disorder prediction 150 181 - -
Vivi3g06108 293 MobiDBLite consensus disorder prediction 274 293 - -
Vivi3g06108 293 SUPERFAMILY AF0104/ALDC/Ptd012-like 76 226 - -
Vivi3g06108 293 MobiDBLite consensus disorder prediction 50 64 - -
Vivi3g06108 293 PIRSF ESCAROLA 163 281 IPR014476 GO:0003680
Vivi3g06108 293 PIRSF ESCAROLA 1 166 IPR014476 GO:0003680
Vivi3g06108 293 MobiDBLite consensus disorder prediction 1 68 - -
Vivi3g06108 293 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 19 254 IPR014476 GO:0003680
Vivi3g06108 293 Gene3D - 79 236 - -
Vivi3g06108 293 Pfam Plants and Prokaryotes Conserved (PCC) domain 80 217 IPR005175 -
Vivi3g06108 293 ProSiteProfiles PPC domain profile profile. 75 243 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06108 Vivi-Chr3 153277961 153279172 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06108 51 226 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 41.989 4.01e-36 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06108 - - tpra:123915288 226.868
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g06108 3 153277961 153279172 Vivi3g06108 3 153277961 153279172 ECH