Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi3g06104 | ATGTCATCTTCACTCGGCAAGATCCAAGACCTACACCTTCTCCCCAAAGATCTTCACAATCTCTCAATCAAAGATCTGGGTGAAAAGGTGAGCGATGAAGAAGAGAATCACCCAGTTGGATTTGGAAAGCATGGCGGAATATGTGCTATCTGTTTGGAGGTGATAGTGCTACAAGAAACTGCTCTTGTAAAAGGTTGCGAGCATGCTTACTGTGTAACATGCATCCTTCATTGGGCCACATACAGTAAGAAAGTTACATGCCCTCAGTGCAAACATCCATTTGAGTTCCTTGCTGTTCATCGCACTCTTGATGGAAGTATTCAGGATTACATGTTCGATGAAAGTGTTTGCCTCCTACTTCGGGCCAAGTGGTTCAAGCCATTAGCTGTTGAAGAGCGTCCAGTTGTTGAAGAAGATATCTATGAGATAGAAGACTATTATTATCAGTATGAAGAAGCTGACGATGATCTAGATGATGATGAGGCTTACTATGGTGCTTCAGCAAATGTCCGGCTTGGCAACCGTAGATGGGGAGACAACGGTTTTGTAAGGGCTGGGCGTCAAGAAGCTCGGCCGGTCCATCGACCAAGCTTCCAGGACTCAGGAGCAAGTTCATCGCGCGAGCCAAAGAAGAAAGAGCAAGAGTCTCCAAAAGTTATGACAGGAAGACGTGCAAAGAGGGCACAGAAAAGGGAAGCTGCTAATAAGGCAGCTGAAGTGAAGCACCAGAAGCATTTGGATAGGTTGGGTAGGAACTAG | 759 | 0.4585 | MSSSLGKIQDLHLLPKDLHNLSIKDLGEKVSDEEENHPVGFGKHGGICAICLEVIVLQETALVKGCEHAYCVTCILHWATYSKKVTCPQCKHPFEFLAVHRTLDGSIQDYMFDESVCLLLRAKWFKPLAVEERPVVEEDIYEIEDYYYQYEEADDDLDDDEAYYGASANVRLGNRRWGDNGFVRAGRQEARPVHRPSFQDSGASSSREPKKKEQESPKVMTGRRAKRAQKREAANKAAEVKHQKHLDRLGRN | 252 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi3g06104 | 252 | ProSitePatterns | Zinc finger RING-type signature. | 66 | 75 | IPR017907 | - | |
| Vivi3g06104 | 252 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 28 | 113 | IPR013083 | - | |
| Vivi3g06104 | 252 | SMART | ring_2 | 48 | 90 | IPR001841 | - | |
| Vivi3g06104 | 252 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 9 | 252 | - | - | |
| Vivi3g06104 | 252 | MobiDBLite | consensus disorder prediction | 205 | 252 | - | - | |
| Vivi3g06104 | 252 | SUPERFAMILY | RING/U-box | 47 | 97 | - | - | |
| Vivi3g06104 | 252 | ProSiteProfiles | Zinc finger RING-type profile. | 48 | 91 | IPR001841 | - | |
| Vivi3g06104 | 252 | MobiDBLite | consensus disorder prediction | 186 | 252 | - | - | |
| Vivi3g06104 | 252 | Pfam | Ring finger domain | 48 | 91 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vivi3g06104 | Vivi-Chr3 | 152402876 | 152405672 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi3g06104 | 23 | 251 | C3H Transcription Factor Family | AT5G19430 | 54.724 | 9.49e-79 | 236 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi3g06104 | - | - | gmx:100785472 | 328.561 |