Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06084 ATGGAGAGAAAGGGGCTTGATTTGAATAGAGAAACAAATGATGTGAATAATGGTAATAAGATTGATGATGGTTTTGTTGATAGAAGTAAAGTAAGGATTTTGCTTTGTGATGCCGATTCAAATACCTCTCAAGAGGTTGTTACACTTCTCTTGAGATGTTGTTATCAGGTTATTTCAGTGAAGTCAGCAAGACAGGTAATTGATGCACTGAATGCAGAGAGTGAAAATATAGATCTCATACTAGCTGAAGTTGGCCTTCCGAAGAAGAAGGGTATGAAGATGTTGAAGTACATAGCACGAGACAAAGAATTGCACAGAATTCCTGTTATAATGATGTCTGCACAAGATGAGGTATCTGTTGTTGTTAAGTGCTTGAAACTGGGAGCAGCAGACTATCTAGTAAAGCCTTTGCGCACAAACGAGCTATTAAATTTGTGGACGCACATGTGGAGAAGGAGACGCATGCTTGGGCTTGCAGAGAAGAACATGTTAAATTATGACTTTGATCTGGTAGCATCAGAGCCTAGTGATGCCAATACAAATAGTACCACCTTGTTCTCAGATGACACCGATGATAGGTCCAAAAGAAGCACCCTTCCAGAGACAGGAATGTCATCCCAACAAGAGCATGAGTCTACTATTGCAAATGCCGCTGATGTTGAGGAACCCCCAGATGACCATGCTTCTGAAAGTCAGCCTGATGCTCATGGAATAAATGATCAGAGGACAGAACATTTTTCATCTGGTCCAAAAAAGAGTGAACTAAGGATCGGGGTTGGGGAGTCATCAGCCTTCTTCACATATGTTAAAGCATCAATGATAAAGAGAAACATTGAAGGGATCATTCATGTTGATAACAATCCTGCTGCACATGTGCAGATGGAAGTTATGCATCAAACATTTGCTCAACAAGGGGTTAATGACCTCAAAATATGTAAAAATGGAGAGACGTGTGAAAGTCAATCGCAAGATGACTTCCCCAGCAGCAACAGTATACCTGATTCTTTATCTATTGAGAGATCTTGTACTCCACCTTCATCTATGGAAGCTTCACATCATAACGGTTACAGAGAAGAAAATTTGAATCACAACCGTCCGAGACATCCAAGAAATGGAACATCTTGTTCTGAGCTTGAAATGTCAAACATGGCCGCACAACATGCTTATCCATATTATATGCCGGGAGTTGTTAATCATGTTATGATGCATTCGTCGGCTCAAATACATCAAAACAATGACCTGCAAAATCATGCTGCGACATCTATGATTGCCCAGTACAATCATGTTCCACAAGGTGGTGCTCATACCACTGCAATGATGTCTTACCCGTATTACCCGATGAGTATGTGCTTACAACCTGGTCAGATTCCTACACCTAATTCATGGCCAACCTTTGGAGGCTCAAATCCATCCGAAGCAAATTTAAGTAAAGTTGATAGGAGAGAAGCAGCATTGATTAAATTTAGACAGAAAAGGAAAGAGCGCTGCTTTGATAAGAAAATTAGGTATGTCAATCGAAAACAACTTGCTGAAAGTCGGCCTCGTGTGAGGGGGCAGTTTGTCAGAAAGTTGAATGGTGCCAATGTGGATCTTAATGGACAGCCTCCTTCCATTGAATTTGATGAAGATGGTCAAGAAGATGAAGATGAACAGGCAGCTAAAGACTCTCCCAGGGATGCTTGA 1683 0.4106 MERKGLDLNRETNDVNNGNKIDDGFVDRSKVRILLCDADSNTSQEVVTLLLRCCYQVISVKSARQVIDALNAESENIDLILAEVGLPKKKGMKMLKYIARDKELHRIPVIMMSAQDEVSVVVKCLKLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNMLNYDFDLVASEPSDANTNSTTLFSDDTDDRSKRSTLPETGMSSQQEHESTIANAADVEEPPDDHASESQPDAHGINDQRTEHFSSGPKKSELRIGVGESSAFFTYVKASMIKRNIEGIIHVDNNPAAHVQMEVMHQTFAQQGVNDLKICKNGETCESQSQDDFPSSNSIPDSLSIERSCTPPSSMEASHHNGYREENLNHNRPRHPRNGTSCSELEMSNMAAQHAYPYYMPGVVNHVMMHSSAQIHQNNDLQNHAATSMIAQYNHVPQGGAHTTAMMSYPYYPMSMCLQPGQIPTPNSWPTFGGSNPSEANLSKVDRREAALIKFRQKRKERCFDKKIRYVNRKQLAESRPRVRGQFVRKLNGANVDLNGQPPSIEFDEDGQEDEDEQAAKDSPRDA 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06084 560 MobiDBLite consensus disorder prediction 524 560 - -
Vivi3g06084 560 SUPERFAMILY CheY-like 27 156 IPR011006 -
Vivi3g06084 560 ProSiteProfiles CCT domain profile. 481 523 IPR010402 GO:0005515
Vivi3g06084 560 Pfam Response regulator receiver domain 33 144 IPR001789 GO:0000160
Vivi3g06084 560 MobiDBLite consensus disorder prediction 318 350 - -
Vivi3g06084 560 MobiDBLite consensus disorder prediction 199 214 - -
Vivi3g06084 560 MobiDBLite consensus disorder prediction 220 251 - -
Vivi3g06084 560 MobiDBLite consensus disorder prediction 176 254 - -
Vivi3g06084 560 SMART REC_2 31 146 IPR001789 GO:0000160
Vivi3g06084 560 MobiDBLite consensus disorder prediction 318 374 - -
Vivi3g06084 560 Pfam CCT motif 481 523 IPR010402 GO:0005515
Vivi3g06084 560 ProSiteProfiles Response regulatory domain profile. 32 150 IPR001789 GO:0000160
Vivi3g06084 560 MobiDBLite consensus disorder prediction 352 372 - -
Vivi3g06084 560 Gene3D - 31 246 - -
Vivi3g06084 560 PANTHER TWO-COMPONENT RESPONSE REGULATOR 31 232 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06084 Vivi-Chr3 151414484 151419013 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06084 14 542 Response Regulator Gene Family AT5G61380 49.593 6.98e-173 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vivi3g06084 Response_reg 1.1e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06084 K12127 - gmx:100271889 815.839