Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06083 ATGGAGAGAAAGGGGCTTGATTTGAATAGAGAAACAAATGATGTGAATAATGGTAATAAGATTGATGATGGTTTTGTTGATAGAAGTAAAGTAAGGATTTTGCTTTGTGATGCCGATTCAAATACCTCTCAAGAGGTTGTTACACTTCTCTTGAGATGTTGTTATCAGGTTATTTCAGTGAAGTCAGCAAGACAGGTAATTGATGCACTGAATGCAGAGAGTGAAAATATAGATCTCATACTAGCTGAAGTTGGCCTTCCGAAGAAGAAGGGTATGAAGATGTTGAAGTACATAGCACGAGACAAAGAATTGCACAGAATTCCTGTTATAATGATGTCTGCACAAGATGAGGTATCTGTTGTTGTTAAGTGCTTGAAACTGGGAGCAGCAGACTATCTAGTAAAGCCTTTGCGCACAAACGAGCTATTAAATTTGTGGACGCACATGTGGAGAAGGAGACGCATGCTTGGGCTTGCAGAGAAGAACATGTTAAATTATGACTTTGATCTGGTAGCATCAGAGCCTAGTGATGCCAATACAAATAGTACCACCTTGTTCTCAGATGACACCGATGATAGGTCCAAAAGAAGCACCCTTCCAGAGACAGGAATGTCATCCCAACAAGAGCATGAGGAACCCCCAGATGACCATGCTTCTGAAAGTCAGCCTGATGCTCATGGAATAAATGATCAGAGGACAGAACATTTTTCATCTGGTCCAAAAAAGAGTGAACTAAGGATCGGGGTTGGGGAGTCATCAGCCTTCTTCACATATGTTAAAGCATCAATGATAAAGAGAAACATTGAAGGGATCATTCATGTTGATAACAATCCTGCTGCACATGTGCAGATGGAAGTTATGCATCAAACATTTGCTCAACAAGGGGTTAATGACCTCAAAATATGTAAAAATGGAGAGACGTGTGAAAGTCAATCGCAAGATGACTTCCCCAGCAGCAACAGTATACCTGATTCTTTATCTATTGAGAGATCTTGTACTCCACCTTCATCTATGGAAGCTTCACATCATAACGGTTACAGAGAAGAAAATTTGAATCACAACCGTCCGAGACATCCAAGAAATGGAACATCTTGTTCTGAGCTTGAAATGTCAAACATGGCCGCACAACATGCTTATCCATATTATATGCCGGGAGTTGTTAATCATGTTATGATGCATTCGTCGGCTCAAATACATCAAAACAATGACCTGCAAAATCATGCTGCGACATCTATGATTGCCCAGTACAATCATGTTCCACAAGGTGGTGCTCATACCACTGCAATGATGTCTTACCCGTATTACCCGATGAGTATGTGCTTACAACCTGGTCAGATTCCTACACCTAATTCATGGCCAACCTTTGGAGGCTCAAATCCATCCGAAGCAAATTTAAGTAAAGTTGATAGGAGAGAAGCAGCATTGATTAAATTTAGACAGAAAAGGAAAGAGCGCTGCTTTGATAAGAAAATTAGGTATGTCAATCGAAAACAACTTGCTGAAAGTCGGCCTCGTGTGAGGGGGCAGTTTGTCAGAAAGTTGAATGGTGCCAATGTGGATCTTAATGGACAGCCTCCTTCCATTGAATTTGATGAAGATGGTCAAGAAGATGAAGATGAACAGGCAGCTAAAGACTCTCCCAGGGATGCTTGA 1653 0.4102 MERKGLDLNRETNDVNNGNKIDDGFVDRSKVRILLCDADSNTSQEVVTLLLRCCYQVISVKSARQVIDALNAESENIDLILAEVGLPKKKGMKMLKYIARDKELHRIPVIMMSAQDEVSVVVKCLKLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNMLNYDFDLVASEPSDANTNSTTLFSDDTDDRSKRSTLPETGMSSQQEHEEPPDDHASESQPDAHGINDQRTEHFSSGPKKSELRIGVGESSAFFTYVKASMIKRNIEGIIHVDNNPAAHVQMEVMHQTFAQQGVNDLKICKNGETCESQSQDDFPSSNSIPDSLSIERSCTPPSSMEASHHNGYREENLNHNRPRHPRNGTSCSELEMSNMAAQHAYPYYMPGVVNHVMMHSSAQIHQNNDLQNHAATSMIAQYNHVPQGGAHTTAMMSYPYYPMSMCLQPGQIPTPNSWPTFGGSNPSEANLSKVDRREAALIKFRQKRKERCFDKKIRYVNRKQLAESRPRVRGQFVRKLNGANVDLNGQPPSIEFDEDGQEDEDEQAAKDSPRDA 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06083 550 MobiDBLite consensus disorder prediction 308 364 - -
Vivi3g06083 550 MobiDBLite consensus disorder prediction 342 362 - -
Vivi3g06083 550 Pfam CCT motif 471 513 IPR010402 GO:0005515
Vivi3g06083 550 MobiDBLite consensus disorder prediction 208 241 - -
Vivi3g06083 550 MobiDBLite consensus disorder prediction 513 550 - -
Vivi3g06083 550 Gene3D - 31 237 - -
Vivi3g06083 550 MobiDBLite consensus disorder prediction 176 244 - -
Vivi3g06083 550 Pfam Response regulator receiver domain 33 144 IPR001789 GO:0000160
Vivi3g06083 550 PANTHER TWO-COMPONENT RESPONSE REGULATOR 31 331 IPR045279 GO:0009736
Vivi3g06083 550 SMART REC_2 31 146 IPR001789 GO:0000160
Vivi3g06083 550 ProSiteProfiles CCT domain profile. 471 513 IPR010402 GO:0005515
Vivi3g06083 550 ProSiteProfiles Response regulatory domain profile. 32 150 IPR001789 GO:0000160
Vivi3g06083 550 SUPERFAMILY CheY-like 27 156 IPR011006 -
Vivi3g06083 550 MobiDBLite consensus disorder prediction 308 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06083 Vivi-Chr3 151414483 151419013 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06083 14 532 Response Regulator Gene Family AT5G61380 48.943 2.84e-170 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vivi3g06083 Response_reg 1.1e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06083 K12127 - gmx:100271889 793.882