Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06082 ATGGAGAGAAAGGGGCTTGATTTGAATAGAGAAACAAATGATGTGAATAATGGTAATAAGATTGATGATGGTTTTGTTGATAGAAGTAAAGTAAGGATTTTGCTTTGTGATGCCGATTCAAATACCTCTCAAGAGGTTGTTACACTTCTCTTGAGATGTTGTTATCAGGTTATTTCAGTGAAGTCAGCAAGACAGGTAATTGATGCACTGAATGCAGAGAGTGAAAATATAGATCTCATACTAGCTGAAGTTGGCCTTCCGAAGAAGAAGGGTATGAAGATGTTGAAGTACATAGCACGAGACAAAGAATTGCACAGAATTCCTGTTATAATGATGTCTGCACAAGATGAGGTATCTGTTGTTGTTAAGTGCTTGAAACTGGGAGCAGCAGACTATCTAGTAAAGCCTTTGCGCACAAACGAGCTATTAAATTTGTGGACGCACATGTGGAGAAGGAGACGCATGCTTGGGCTTGCAGAGAAGAACATGTTAAATTATGACTTTGATCTGGTAGCATCAGAGCCTAGTGATGCCAATACAAATAGTACCACCTTGTTCTCAGATGACACCGATGATAGGTCCAAAAGAAGCACCCTTCCAGAGACAGGAATGTCATCCCAACAAGAGCATGAGTCTACTATTGCAAATGCCGCTGATGTTGAGGAACCCCCAGATGACCATGCTTCTGAAAGTCAGCCTGATGCTCATGGAATAAATGATCAGAGGACAGATGCTAGTAATTTTGTAGAACATTTTTCATCTGGTCCAAAAAAGAGTGAACTAAGGATCGGGGTTGGGGAGTCATCAGCCTTCTTCACATATGTTAAAGCATCAATGATAAAGAGAAACATTGAAGGGATCATTCATGTTGATAACAATCCTGCTGCACATGTGCAGATGGAAGTTATGCATCAAACATTTGCTCAACAAGGGGTTAATGACCTCAAAATATGTAAAAATGGAGAGACGTGTGAAAGTCAATCGCAAGATGACTTCCCCAGCAGCAACAGTATACCTGATTCTTTATCTATTGAGAGATCTTGTACTCCACCTTCATCTATGGAAGCTTCACATCATAACGGTTACAGAGAAGAAAATTTGAATCACAACCGTCCGAGACATCCAAGAAATGGAACATCTTGTTCTGAGCTTGAAATGTCAAACATGGCCGCACAACATGCTTATCCATATTATATGCCGGGAGTTGTTAATCATGTTATGATGCATTCGTCGGCTCAAATACATCAAAACAATGACCTGCAAAATCATGCTGCGACATCTATGATTGCCCAGTACAATCATGTTCCACAAGGTGGTGCTCATACCACTGCAATGATGTCTTACCCGTATTACCCGATGAGTATGTGCTTACAACCTGGTCAGATTCCTACACCTAATTCATGGCCAACCTTTGGAGGCTCAAATCCATCCGAAGCAAATTTAAGTAAAGTTGATAGGAGAGAAGCAGCATTGATTAAATTTAGACAGAAAAGGAAAGAGCGCTGCTTTGATAAGAAAATTAGGTATGTCAATCGAAAACAACTTGCTGAAAGTCGGCCTCGTGTGAGGGGGCAGTTTGTCAGAAAGTTGAATGGTGCCAATGTGGATCTTAATGGACAGCCTCCTTCCATTGAATTTGATGAAGATGGTCAAGAAGATGAAGATGAACAGGCAGCTAAAGACTCTCCCAGGGATGCTTGA 1701 0.4092 MERKGLDLNRETNDVNNGNKIDDGFVDRSKVRILLCDADSNTSQEVVTLLLRCCYQVISVKSARQVIDALNAESENIDLILAEVGLPKKKGMKMLKYIARDKELHRIPVIMMSAQDEVSVVVKCLKLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNMLNYDFDLVASEPSDANTNSTTLFSDDTDDRSKRSTLPETGMSSQQEHESTIANAADVEEPPDDHASESQPDAHGINDQRTDASNFVEHFSSGPKKSELRIGVGESSAFFTYVKASMIKRNIEGIIHVDNNPAAHVQMEVMHQTFAQQGVNDLKICKNGETCESQSQDDFPSSNSIPDSLSIERSCTPPSSMEASHHNGYREENLNHNRPRHPRNGTSCSELEMSNMAAQHAYPYYMPGVVNHVMMHSSAQIHQNNDLQNHAATSMIAQYNHVPQGGAHTTAMMSYPYYPMSMCLQPGQIPTPNSWPTFGGSNPSEANLSKVDRREAALIKFRQKRKERCFDKKIRYVNRKQLAESRPRVRGQFVRKLNGANVDLNGQPPSIEFDEDGQEDEDEQAAKDSPRDA 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06082 566 Pfam CCT motif 487 529 IPR010402 GO:0005515
Vivi3g06082 566 MobiDBLite consensus disorder prediction 324 380 - -
Vivi3g06082 566 SUPERFAMILY CheY-like 27 156 IPR011006 -
Vivi3g06082 566 MobiDBLite consensus disorder prediction 176 241 - -
Vivi3g06082 566 Gene3D - 31 265 - -
Vivi3g06082 566 MobiDBLite consensus disorder prediction 358 378 - -
Vivi3g06082 566 MobiDBLite consensus disorder prediction 529 566 - -
Vivi3g06082 566 MobiDBLite consensus disorder prediction 199 214 - -
Vivi3g06082 566 SMART REC_2 31 146 IPR001789 GO:0000160
Vivi3g06082 566 PANTHER TWO-COMPONENT RESPONSE REGULATOR 31 309 IPR045279 GO:0009736
Vivi3g06082 566 Pfam Response regulator receiver domain 33 144 IPR001789 GO:0000160
Vivi3g06082 566 ProSiteProfiles CCT domain profile. 487 529 IPR010402 GO:0005515
Vivi3g06082 566 ProSiteProfiles Response regulatory domain profile. 32 150 IPR001789 GO:0000160
Vivi3g06082 566 MobiDBLite consensus disorder prediction 324 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06082 Vivi-Chr3 151414482 151419013 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06082 14 548 Response Regulator Gene Family AT5G61380 49.436 5.81e-172 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vivi3g06082 Response_reg 1.1e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06082 K12127 - gmx:100271889 809.29