Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06081 ATGGAGAGAAAGGGGCTTGATTTGAATAGAGAAACAAATGATGTGAATAATGGTAATAAGATTGATGATGGTTTTGTTGATAGAAGTAAAGTAAGGATTTTGCTTTGTGATGCCGATTCAAATACCTCTCAAGAGGTTGTTACACTTCTCTTGAGATGTTGTTATCAGGTTATTTCAGTGAAGTCAGCAAGACAGGTAATTGATGCACTGAATGCAGAGAGTGAAAATATAGATCTCATACTAGCTGAAGTTGGCCTTCCGAAGAAGAAGGGTATGAAGATGTTGAAGTACATAGCACGAGACAAAGAATTGCACAGAATTCCTGTTATAATGATGTCTGCACAAGATGAGGTATCTGTTGTTGTTAAGTGCTTGAAACTGGGAGCAGCAGACTATCTAGTAAAGCCTTTGCGCACAAACGAGCTATTAAATTTGTGGACGCACATGTGGAGAAGGAGACGCATGCTTGGGCTTGCAGAGAAGAACATGTTAAATTATGACTTTGATCTGGTAGCATCAGAGCCTAGTGATGCCAATACAAATAGTACCACCTTGTTCTCAGATGACACCGATGATAGGTCCAAAAGAAGCACCCTTCCAGAGACAGGAATGTCATCCCAACAAGAGCATGAGGAACCCCCAGATGACCATGCTTCTGAAAGTCAGCCTGATGCTCATGGAATAAATGATCAGAGGACAGATGCTAGTAATTTTGTAGAACATTTTTCATCTGGTCCAAAAAAGAGTGAACTAAGGATCGGGGTTGGGGAGTCATCAGCCTTCTTCACATATGTTAAAGCATCAATGATAAAGAGAAACATTGAAGGGATCATTCATGTTGATAACAATCCTGCTGCACATGTGCAGATGGAAGTTATGCATCAAACATTTGCTCAACAAGGGGTTAATGACCTCAAAATATGTAAAAATGGAGAGACGTGTGAAAGTCAATCGCAAGATGACTTCCCCAGCAGCAACAGTATACCTGATTCTTTATCTATTGAGAGATCTTGTACTCCACCTTCATCTATGGAAGCTTCACATCATAACGGTTACAGAGAAGAAAATTTGAATCACAACCGTCCGAGACATCCAAGAAATGGAACATCTTGTTCTGAGCTTGAAATGTCAAACATGGCCGCACAACATGCTTATCCATATTATATGCCGGGAGTTGTTAATCATGTTATGATGCATTCGTCGGCTCAAATACATCAAAACAATGACCTGCAAAATCATGCTGCGACATCTATGATTGCCCAGTACAATCATGTTCCACAAGGTGGTGCTCATACCACTGCAATGATGTCTTACCCGTATTACCCGATGAGTATGTGCTTACAACCTGGTCAGATTCCTACACCTAATTCATGGCCAACCTTTGGAGGCTCAAATCCATCCGAAGCAAATTTAAGTAAAGTTGATAGGAGAGAAGCAGCATTGATTAAATTTAGACAGAAAAGGAAAGAGCGCTGCTTTGATAAGAAAATTAGGTATGTCAATCGAAAACAACTTGCTGAAAGTCGGCCTCGTGTGAGGGGGCAGTTTGTCAGAAAGTTGAATGGTGCCAATGTGGATCTTAATGGACAGCCTCCTTCCATTGAATTTGATGAAGATGGTCAAGAAGATGAAGATGAACAGGCAGCTAAAGACTCTCCCAGGGATGCTTGA 1671 0.4087 MERKGLDLNRETNDVNNGNKIDDGFVDRSKVRILLCDADSNTSQEVVTLLLRCCYQVISVKSARQVIDALNAESENIDLILAEVGLPKKKGMKMLKYIARDKELHRIPVIMMSAQDEVSVVVKCLKLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNMLNYDFDLVASEPSDANTNSTTLFSDDTDDRSKRSTLPETGMSSQQEHEEPPDDHASESQPDAHGINDQRTDASNFVEHFSSGPKKSELRIGVGESSAFFTYVKASMIKRNIEGIIHVDNNPAAHVQMEVMHQTFAQQGVNDLKICKNGETCESQSQDDFPSSNSIPDSLSIERSCTPPSSMEASHHNGYREENLNHNRPRHPRNGTSCSELEMSNMAAQHAYPYYMPGVVNHVMMHSSAQIHQNNDLQNHAATSMIAQYNHVPQGGAHTTAMMSYPYYPMSMCLQPGQIPTPNSWPTFGGSNPSEANLSKVDRREAALIKFRQKRKERCFDKKIRYVNRKQLAESRPRVRGQFVRKLNGANVDLNGQPPSIEFDEDGQEDEDEQAAKDSPRDA 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06081 556 MobiDBLite consensus disorder prediction 208 223 - -
Vivi3g06081 556 Pfam CCT motif 477 519 IPR010402 GO:0005515
Vivi3g06081 556 Pfam Response regulator receiver domain 33 144 IPR001789 GO:0000160
Vivi3g06081 556 MobiDBLite consensus disorder prediction 176 231 - -
Vivi3g06081 556 MobiDBLite consensus disorder prediction 314 346 - -
Vivi3g06081 556 ProSiteProfiles CCT domain profile. 477 519 IPR010402 GO:0005515
Vivi3g06081 556 SMART REC_2 31 146 IPR001789 GO:0000160
Vivi3g06081 556 SUPERFAMILY CheY-like 27 156 IPR011006 -
Vivi3g06081 556 MobiDBLite consensus disorder prediction 314 370 - -
Vivi3g06081 556 Gene3D - 31 260 - -
Vivi3g06081 556 ProSiteProfiles Response regulatory domain profile. 32 150 IPR001789 GO:0000160
Vivi3g06081 556 MobiDBLite consensus disorder prediction 348 368 - -
Vivi3g06081 556 PANTHER TWO-COMPONENT RESPONSE REGULATOR 31 307 IPR045279 GO:0009736
Vivi3g06081 556 MobiDBLite consensus disorder prediction 519 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06081 Vivi-Chr3 151414481 151419013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06081 14 538 Response Regulator Gene Family AT5G61380 48.792 4.16e-169 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vivi3g06081 Response_reg 1.1e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06081 K12127 - gmx:100271889 787.334