Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06064 ATGGCAAGCACTATTCTCAGAAGATCCTCTTCCATATTCTCACGGCGTTTAATCGCCGCCTTAACTTCCGTTGAACCACTTTTGTCACGTCACAACAGCCACGCCTTGTCCTCCGCCGTCTACTGTAACGGAAACAGGCTGTTTCACGCCAAATCTGGACCGTTGAATTTCCACTCGTCGCTGGTTTCTCGTGGTGCGCAACTTGCCGTGGATTACGATGACGACGCGCAACACGATGAAGGTGAGGAAGGACTGGAGATCGCGAAGCTTGAAATTTCTAAGGAGATTGTTAATGCTCTTGCAAAGAAAGGTATCACGAAGCTCTTCCCCATTCAGAAAGCTGTGCTGGAACCTGCTATGCAAGGAAGGGATATGATTGGTCGAGCTAGAACAGGAACTGGGAAAACTCTTGCTTTTGGGATACCTATCTTGGATAAGATTATTAAGTTTAATGCTAAGAATGGGAAAAGAAGAGATCCTATGGCTTTGGTGTTGGCACCGACCAGGGAACTTGCACGGCAGGTTGAAAAGGAGTTCAATGATGCTGCACCTAACTTGGAAACAATTTGTCTTTATGGGGGTATGCCTATTCAGCAACAAATCAGCCAACTTGGCGGTGGCGTAGATATTGTAGTTGGCACGCCTGGACGTGTTATTGATCTTCTCAAAAGGGGTTCTTTGAAGTTGAAGGATGTTAACTATTTAGTTCTTGATGAAGCTGATCAGATGCTTCAAGTAGGATTTCAAGAAGCGGTGGAGATTATTTTGCAGAAGTTGCCTTTAAAGCGTCAAACTGTTATGTTCTCGGCGACAATGCCTTCTTGGATAAAGGATATTACACGCAAATACCTTAACAATCCCTTAACCATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCAATGTACTCTATTGCATCTAATGCTTATGCTAAAGCAGGAATTCTAGCACCTCTTATAAATGAACATGCTAAAGGAGGAAAGTGTATCGTTTTCACTCAAACCAAACGTGATGCTGATCGACTATCACATATAATGTCAAAAAGCGTTAAATGTGAGGCTTTGCATGGAGATATTTCTCAAACTCAAAGAGAAAGAACTCTTACTGGCTTTAGAAACAACTACTTCAATGTTTTAGTGGCAACTGATGTTGCTTCCCGTGGGCTTGATATACCGAATGTTGATCTTGTAATACATTATGAACTTCCAAATTCTTCAGAGATATTTGTTCATCGAACTGGACGAACAGGACGCGCTGGTAAGAAAGGAACTGCTATTCTTGTCCACACGGAAAATCAATCCCGGGCCGTACAGTCAATTGCACGAGATGTTGGATGTACATTCAAAGAGTTACCTAAGATTGCTGGTGAGAGTGGATCAGAAGACATGTTTGGTGGAATGAGTGGGAGTCGATATGGCTCTTCAGGAGGTAGGGATCGTCGATCAGGCGGTTCAGGTTTTGGTGGTAGTTCTGGATTTGGCCGAACTGGCGATGGAAAATCCAGTCGCTTTAGTAGCTCTGGTTCAAGTCAGTCAGGAGGTGGATTTGGGGGATTTTCTGGTAAAACAGATAAATATGGTGGTGGAGGATTCAGCAATTCAGGTCGTTCTAGTGGCTTTGGAAATTTTGGCTCCGGTAAATCTGGGTCATATGGTGGCAGAAACTGA 1680 0.4363 MASTILRRSSSIFSRRLIAALTSVEPLLSRHNSHALSSAVYCNGNRLFHAKSGPLNFHSSLVSRGAQLAVDYDDDAQHDEGEEGLEIAKLEISKEIVNALAKKGITKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNAKNGKRRDPMALVLAPTRELARQVEKEFNDAAPNLETICLYGGMPIQQQISQLGGGVDIVVGTPGRVIDLLKRGSLKLKDVNYLVLDEADQMLQVGFQEAVEIILQKLPLKRQTVMFSATMPSWIKDITRKYLNNPLTIDLVGDSDQKLADGISMYSIASNAYAKAGILAPLINEHAKGGKCIVFTQTKRDADRLSHIMSKSVKCEALHGDISQTQRERTLTGFRNNYFNVLVATDVASRGLDIPNVDLVIHYELPNSSEIFVHRTGRTGRAGKKGTAILVHTENQSRAVQSIARDVGCTFKELPKIAGESGSEDMFGGMSGSRYGSSGGRDRRSGGSGFGGSSGFGRTGDGKSSRFSSSGSSQSGGGFGGFSGKTDKYGGGGFSNSGRSSGFGNFGSGKSGSYGGRN 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06064 559 MobiDBLite consensus disorder prediction 534 559 - -
Vivi3g06064 559 SMART ultradead3 104 307 IPR014001 -
Vivi3g06064 559 FunFam ATP-dependent RNA helicase RhlE 74 293 - -
Vivi3g06064 559 Gene3D - 306 467 IPR027417 -
Vivi3g06064 559 SMART helicmild6 344 424 IPR001650 -
Vivi3g06064 559 Gene3D - 86 294 IPR027417 -
Vivi3g06064 559 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 319 463 IPR001650 -
Vivi3g06064 559 Pfam Helicase conserved C-terminal domain 319 424 IPR001650 -
Vivi3g06064 559 CDD DEADc 96 291 - -
Vivi3g06064 559 MobiDBLite consensus disorder prediction 463 559 - -
Vivi3g06064 559 MobiDBLite consensus disorder prediction 499 521 - -
Vivi3g06064 559 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 80 453 - -
Vivi3g06064 559 Pfam DEAD/DEAH box helicase 109 278 IPR011545 GO:0003676|GO:0005524
Vivi3g06064 559 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 116 290 IPR014001 -
Vivi3g06064 559 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 439 IPR027417 -
Vivi3g06064 559 CDD SF2_C_DEAD 316 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06064 Vivi-Chr3 150416974 150422274 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06064 73 456 Eukaryotic Initiation Factors Gene Family AT3G19760 33.163 8.65e-65 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06064 - - gmx:100802553 678.707