Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06063 ATGTTCTTATTATCACCATCTCACAAAATGGCCACTCTTGTTTTCTTCCTTCTACTTCTTTCCTTCACTCCTTCTATTTCTTCACTTTCTTTGAAAAACCAAGCTTCAATCTTAGTTTCAATGAAACAAGATTTTGAACCTTCAAACATTTCAAGTTTAAACACATGGAACATTTCTAACTATGTCTCACTTTGCACTTGGTATGGAATTCAATGTGACCAAACCAACAATGTTGTTTCACTTGACATATCAAACTTAAATGTTTCTGGTTCACTTTCACCTCTCATCACAAACCTTTCCACTCTTGTGAATCTTTCAATCCAAGGAAACAGTTTCCATGGTGAGTTTCCATCTGAAATTCATAACCTACAAAGTTTGAAATTCCTCAACATATCAAACAATATGTTCACTGGAAACATGAGTTGGGAGTTTAACAAGTTGAAAGAGCTTGAAGTTCTTGATGTTTACAACAATGGCTTCCATGGTTCACTTCCTCATGGTGTCACTCAGTTGTTGAGGCTTAAGCATTTGAATTTTGGAGGGAATTACTTTTCTGGAAAAATTCCTCCAAGTTATGGTGAAATGAAACAGCTGAAGTTTTTGTCTCTTGCTGGAAATGATTTGAGTGGTTTTTTACCTATTGAGCTTGGAAATTTGACTGGTTTGGAGTATCTTTATTTAGGTTATTTCAATCAATTTGATGGTGGAATTCCAAAGGAGTTTGGTAAGTTGGTTAATTTGGTACATTTAGACCTAGCAAATTGTTTCTTGAAAGGTTCAATTCCTATTGAGTTAGGTCAACTTTCCAAGTTAGATACACTTTTCTTGCAAACGAATCAACTAACCGGTTTGATTCCGTCTGAATTAGGTAATTTGAGTAGATTGAATGCTCTTGATTTATCACTCAATAACCTAACCGGCGGAATCCCGGACGAATTCTCGAATCTTCGAGAACTTTCTCTATTAAACTTGTTTATCAACAAGTTTCACGGCGAAATTCCTGAGTTCGTCTCCGAGTTGCCTAAATTGGAAGTACTTAAGCTTTGGAGGAATAACTTCACTGGAGTTATTCCTCCGAAGCTTGGTCAGAACGGAAGGTTAACCGAGGTTGATTTGTCGACGAATAAACTCACTGGAGTGTTGCCGAAATCGCTTTGCCTTGGAAAGAGGTTGAAAATCTTGATCTTGCTTAACAACTTTTTGTTTGGTTCTTTGCCTAATGATCTTGGTGAATGCTACACTCTCCAAAGAGTTAGAATTGGTCAGAACTATTTGACTGGTTCAATTCCACATGGTTTTCTTTATTTACCAAACCTTTCTCTTTTGGAGCTACAGAACAATTATCTCAGTGGTATGATTCCACAAGAAAAGGGAAAGAACACAACCTCGAAATTAGAACAGTGTAATCTATCAAACAATAGGTTATCAGGTTCTTTACCAACCTCAATCGGAAACTTTCCGAATTTGCAGATTCTTCAGCTTAGTGGAAACAGATTCTCAGGTGAAATTCCATCAGATATAGGAAAACTCAGAAGTATCCTCAAATTAGATATAAGTAGCAACAACTTTTCGGGTACTATTCCGATTGAAATAGGTAAATGTACCTTGCTAACTTACTTAGATTTGAGTCAAAACCAGTTTTCAGGTCCTATTCCAATTCAGCTTGCTCAAATTCATATACTAAACCATCTTAATGTGTCGTGGAATCACTTGAACCAAACACTTCCTAAGGAACTTGGAGCCTTAAAGGGCTTAACTTCAGCTGATTTCTCGAATAATAACTTCTCCGGTTCTATACCAGAAGGAGGACAGTTCTCAACTTTTAAGTCAAAGTTCTTTGAAGGTAATCCTCATCTATGTGGATATGAGTTCAATCCATGCAAACTTTCGCCAACAGATGAACCGGAATCGCAACAAAAAGGCAGTTTGAGATATGGATTACATGGAAAGTTTAAGCTCCTTTTCGCGTTGGCGTTATTGCTATGTTCATTGGTTTTTGCAAGTTTAGCTATCATCAAGAGTAGAAAATCAAGTAGAGATTCGAATTCATGGAAGCTGACAGCATTTCAGAAAATGGACTACGGAAGTGAAGAAATCGTCGGTTGTATAAAGGAAAGCAATATGATAGGAAGAGGCGGAGCCGGTGTTGTTTACAAAGGAACAATGCCGAATGGAGATGAAGTAGCTGTGAAGAAACTATTAGGAATCAACAACGGTTCTTCTTCTCATCAGGATAACGGTTTCTCGGCTGAGATTAAGACGTTAGGTAGAATCCGACACAGGTATATCGTTCGGTTGGTTGCTTTTTGTTCGAACAAAGAAACGAATTTGCTTGTGTACGAGTATATGCAAAATGGAAGTCTTGGTGAAGTTTTGCATGGGAAGAGAGGTGAGTTTCTGAACTGGGATGTTAGGCTGAAAATTGCTGTTGAGGCTGCTAAAGGACTTTGTTATTTGCATCATGATTGTTCACCTTTGATCATTCATAGAGATGTTAAGTCGAATAATATTTTGTTGAACTCCGAATTCGAGGCTCATGTTGCTGATTTTGGACTTGCCAAGTTCTTGCAAGATAATGGAAATTCCGAATGCATGTCCTCTATTGCTGGTTCCTATGGATATATTGCTCCAGAATATGCATACACTTTGAAAGTTGATGAAAAAAGTGATGTGTATAGTTTTGGAGTGGTGCTTTTAGAGCTCATTACGGGGAAAAGGCCGGTTGGAGATTTTGAAGAAGAAGGATTAGACATTGTTCAATGGACAAAGATGAAAACCAATTGGAACAAGGATATGGTGATGAAGATCCTTGATGAGAGGCTAGCTCAAATTCCTTTAGATGAAGCAAAGCAAGTGTTTTTTGTGGCAATTTTATGTGTCCATGAACATAGTGTGGAGAGACCAACTATGAGGGAAGTGGTTCAAATGCTTGCACAAGCAAAGTGA 2946 0.3768 MFLLSPSHKMATLVFFLLLLSFTPSISSLSLKNQASILVSMKQDFEPSNISSLNTWNISNYVSLCTWYGIQCDQTNNVVSLDISNLNVSGSLSPLITNLSTLVNLSIQGNSFHGEFPSEIHNLQSLKFLNISNNMFTGNMSWEFNKLKELEVLDVYNNGFHGSLPHGVTQLLRLKHLNFGGNYFSGKIPPSYGEMKQLKFLSLAGNDLSGFLPIELGNLTGLEYLYLGYFNQFDGGIPKEFGKLVNLVHLDLANCFLKGSIPIELGQLSKLDTLFLQTNQLTGLIPSELGNLSRLNALDLSLNNLTGGIPDEFSNLRELSLLNLFINKFHGEIPEFVSELPKLEVLKLWRNNFTGVIPPKLGQNGRLTEVDLSTNKLTGVLPKSLCLGKRLKILILLNNFLFGSLPNDLGECYTLQRVRIGQNYLTGSIPHGFLYLPNLSLLELQNNYLSGMIPQEKGKNTTSKLEQCNLSNNRLSGSLPTSIGNFPNLQILQLSGNRFSGEIPSDIGKLRSILKLDISSNNFSGTIPIEIGKCTLLTYLDLSQNQFSGPIPIQLAQIHILNHLNVSWNHLNQTLPKELGALKGLTSADFSNNNFSGSIPEGGQFSTFKSKFFEGNPHLCGYEFNPCKLSPTDEPESQQKGSLRYGLHGKFKLLFALALLLCSLVFASLAIIKSRKSSRDSNSWKLTAFQKMDYGSEEIVGCIKESNMIGRGGAGVVYKGTMPNGDEVAVKKLLGINNGSSSHQDNGFSAEIKTLGRIRHRYIVRLVAFCSNKETNLLVYEYMQNGSLGEVLHGKRGEFLNWDVRLKIAVEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSEFEAHVADFGLAKFLQDNGNSECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGKRPVGDFEEEGLDIVQWTKMKTNWNKDMVMKILDERLAQIPLDEAKQVFFVAILCVHEHSVERPTMREVVQMLAQAK 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06063 981 SUPERFAMILY L domain-like 364 626 - -
Vivi3g06063 981 Pfam Protein tyrosine and serine/threonine kinase 705 977 IPR001245 GO:0004672|GO:0006468
Vivi3g06063 981 ProSiteProfiles Protein kinase domain profile. 703 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g06063 981 FunFam Leucine-rich repeat receptor-like protein kinase 31 190 - -
Vivi3g06063 981 SUPERFAMILY Protein kinase-like (PK-like) 695 977 IPR011009 -
Vivi3g06063 981 Gene3D Ribonuclease Inhibitor 143 229 IPR032675 -
Vivi3g06063 981 Pfam Leucine rich repeat N-terminal domain 32 73 IPR013210 -
Vivi3g06063 981 Gene3D Ribonuclease Inhibitor 514 627 IPR032675 -
Vivi3g06063 981 SMART LRR_typ_2 123 146 IPR003591 -
Vivi3g06063 981 SMART LRR_typ_2 340 364 IPR003591 -
Vivi3g06063 981 SMART LRR_typ_2 558 582 IPR003591 -
Vivi3g06063 981 SMART LRR_typ_2 147 171 IPR003591 -
Vivi3g06063 981 SMART LRR_typ_2 436 460 IPR003591 -
Vivi3g06063 981 SMART LRR_typ_2 486 510 IPR003591 -
Vivi3g06063 981 SMART LRR_typ_2 268 291 IPR003591 -
Vivi3g06063 981 SMART LRR_typ_2 292 315 IPR003591 -
Vivi3g06063 981 SMART LRR_typ_2 195 219 IPR003591 -
Vivi3g06063 981 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 783 981 - -
Vivi3g06063 981 ProSitePatterns Serine/Threonine protein kinases active-site signature. 827 839 IPR008271 GO:0004672|GO:0006468
Vivi3g06063 981 SUPERFAMILY RNI-like 80 400 - -
Vivi3g06063 981 Gene3D Phosphorylase Kinase; domain 1 673 782 - -
Vivi3g06063 981 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 672 782 - -
Vivi3g06063 981 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 197 979 - -
Vivi3g06063 981 Pfam Leucine rich repeat 270 328 IPR001611 GO:0005515
Vivi3g06063 981 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 344 631 - -
Vivi3g06063 981 Gene3D Ribonuclease Inhibitor 33 142 IPR032675 -
Vivi3g06063 981 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 232 337 - -
Vivi3g06063 981 SMART serkin_6 703 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g06063 981 Gene3D Transferase(Phosphotransferase) domain 1 783 981 - -
Vivi3g06063 981 Gene3D Ribonuclease Inhibitor 389 513 IPR032675 -
Vivi3g06063 981 Gene3D Ribonuclease Inhibitor 230 387 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06063 Vivi-Chr3 150347230 150351537 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06063 51 979 Receptor kinase-like Gene Family AT5G65700 58.244 0.0 1069
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi3g06063 PK_Tyr_Ser-Thr 4.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06063 - - gmx:100803075 1462.59