Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06022 ATGTTTCATTTTCTCATTCCTAGGTTCATTCATCATAAGACACTTTTATGTCGCAATATTTTTTCTCGTTTATTCAATTTTCGTTCTTTCTCCGTTTCCAGTAATCATCAATCTGACAACCTTACATTGTCAAACCTCGTTAACTCATGTAACTTGTCCCCCGAAACTTCCCTTAAACTCTCCGAAAGGTTGAAACTAGTAAAAAACCCTAACGGCCCAATTGCTGTCATTCAACTCTTCAGAAGCTATGGCTTCTCCGATTCCCATATATCAAAGCTTGTCAAGAAACGCCCTTTTCTGCTTTTATCACATCCTGAAAACACCCTATTGCCAAAGCTCAAATTTTTGCAATCCATTTGGGTTTCAGCCACTGATTTCCCCAAAATCCTACTTGGGAACACTTCCTTTTTGTCAGCAAACTTGGAGAAAAACCTAATACCTCGCTACGAAATTGTTCGAAGCCTAGTTCGTGACGATAAAGAGGTGGTTTCAGCTTTGAAACATGGATCATGGGTTTTTTACAATGATTCCATGGTTAATGATTCTGTTCCAAACATTGAGGTTTTGAGGAAACTCGGTGTGCCGCAACGTTTCATATCCCTTTTGGTTTGTTATTTTCCTAGTGTTGCATTCCACAAGCATTCTGTATTTGTTGAGGCGGTTAATTCAGTCGTCGAAATGGAGTTCAATCCTTTGCAGCTTAATTTTGTTTTGGCTCTTCGAGTTATTGTAAGTATGGATAAAGAAAACTGGGAATCGAAGTTTAAGATTTACGCGAAGTGGGGCTGGTCGAGAGAAGTCTGTCTTTTGGCCTTCCGGAAACGGCCTCAGTGTATATTGATGTCGGAAAAAGGTATTAATAAAACAATGAACTTCTTGGTGAATGACGCGGGTCTTACACCAGAAGCCATTGCTAAATTCCCGGTGATTCTGTCCCGCAACTTGGAGAAGGTGCTTGTCCCTAGATTTGCAGTAGTTAAGATTTTGAAATCAAAGGGTTTGAAAAAGAGGGGTTTGTCCTTAGGCAGCTTTACTTTGATAAGTGAGAAAAAGTTTCTTGAGAAATATGTGACCCCGTTTCAGAAAGATTTGCCATTGTTATTGGATGCGTATAAGGATGCATATAAAGCTCATAAGACAGATTAA 1146 0.3935 MFHFLIPRFIHHKTLLCRNIFSRLFNFRSFSVSSNHQSDNLTLSNLVNSCNLSPETSLKLSERLKLVKNPNGPIAVIQLFRSYGFSDSHISKLVKKRPFLLLSHPENTLLPKLKFLQSIWVSATDFPKILLGNTSFLSANLEKNLIPRYEIVRSLVRDDKEVVSALKHGSWVFYNDSMVNDSVPNIEVLRKLGVPQRFISLLVCYFPSVAFHKHSVFVEAVNSVVEMEFNPLQLNFVLALRVIVSMDKENWESKFKIYAKWGWSREVCLLAFRKRPQCILMSEKGINKTMNFLVNDAGLTPEAIAKFPVILSRNLEKVLVPRFAVVKILKSKGLKKRGLSLGSFTLISEKKFLEKYVTPFQKDLPLLLDAYKDAYKAHKTD 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06022 381 Gene3D Transcription termination factor 3, mitochondrial 139 364 IPR038538 -
Vivi3g06022 381 FunFam Mitochondrial transcription termination factor-like 141 364 - -
Vivi3g06022 381 SMART mt_12 127 158 IPR003690 GO:0003690|GO:0006355
Vivi3g06022 381 SMART mt_12 301 335 IPR003690 GO:0003690|GO:0006355
Vivi3g06022 381 SMART mt_12 269 300 IPR003690 GO:0003690|GO:0006355
Vivi3g06022 381 SMART mt_12 91 122 IPR003690 GO:0003690|GO:0006355
Vivi3g06022 381 SMART mt_12 234 264 IPR003690 GO:0003690|GO:0006355
Vivi3g06022 381 Pfam mTERF 243 353 IPR003690 GO:0003690|GO:0006355
Vivi3g06022 381 Pfam mTERF 77 302 IPR003690 GO:0003690|GO:0006355
Vivi3g06022 381 PANTHER CGI-12 PROTEIN-RELATED 42 359 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06022 Vivi-Chr3 148274145 148275290 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vivi3g06022 mTERF 2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06022 K15031 - gmx:106799612 366.696