Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05991 ATGACCACCAACAACCACCGTGAAAATTTGTTGATGTCAACACCATCATCAAAATCACCATCCTCCGGAGCATTTTTCAATGGTCCTAGTGAACAAAAGGAGGATCTGGCTGCAATGCCCTTTAAGAGATGTAAGGGTAGACCACGGGGCTCCAAGAACAAACCCAAGTCCTATATTGAGATTGAAGAAGAACCCGATAACATCATGAAATGGGTTGTCATCAAAATCCCTACTGGAGACGATATAGTGCAGTCTCTCATCAATGTTGCTTTGCATCATCGAGCTAACATCACTATCCTAGGAGGTTTCGGTCTTGTATCTGATGTTACACTTCATAATTCAGTGTCCCAAGTCCCTCCGTTAACAATATCAGGATCCTCTCAAATGGTATCTATCAGTGGAACTTATTTCAATACCTATAATGGAGTTTTCATTGAACCTTTTCATTCTTCTTTTTCCATTTTCCTTGCTGGTGATCGTGGGGAAGTGTTTGGTGGGACTGTTGTAGGCAAACTTAAGGCTGCAGCTGATATTTTAATCACAGCCACTCTTTCGAAAAAGCCTGAGTTTTATAAAGGAGACACCATAAATAAAAGTATTCGAAAAGTTGAAGAAGATGGCCTAAAAGGTGTAAATGGTGTTACGGATGCAAATTCAAACCACCCAAATTATCAATTCCTTGCTCCTCCTCCAGGTTTTGAGGATGTCAAGCCGTGGAACCATTGCATTCATACTAATAATTACTAG 747 0.4056 MTTNNHRENLLMSTPSSKSPSSGAFFNGPSEQKEDLAAMPFKRCKGRPRGSKNKPKSYIEIEEEPDNIMKWVVIKIPTGDDIVQSLINVALHHRANITILGGFGLVSDVTLHNSVSQVPPLTISGSSQMVSISGTYFNTYNGVFIEPFHSSFSIFLAGDRGEVFGGTVVGKLKAAADILITATLSKKPEFYKGDTINKSIRKVEEDGLKGVNGVTDANSNHPNYQFLAPPPGFEDVKPWNHCIHTNNY 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05991 248 Pfam Plants and Prokaryotes Conserved (PCC) domain 72 182 IPR005175 -
Vivi3g05991 248 CDD DUF296 73 181 IPR005175 -
Vivi3g05991 248 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 22 192 IPR014476 GO:0003680
Vivi3g05991 248 Gene3D - 70 199 - -
Vivi3g05991 248 MobiDBLite consensus disorder prediction 1 33 - -
Vivi3g05991 248 SUPERFAMILY AF0104/ALDC/Ptd012-like 67 182 - -
Vivi3g05991 248 MobiDBLite consensus disorder prediction 1 28 - -
Vivi3g05991 248 ProSiteProfiles PPC domain profile profile. 66 214 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05991 Vivi-Chr3 146385969 146386715 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05991 43 205 AT-hook Motif Nuclear Localized (AHL) Family AT1G14490 33.735 2.89e-20 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05991 - - vvo:131633569 470.7