Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05978 ATGTTAGAGGACATAATTGCACCGTTCTTTTTATCCAAAAAGTTGAAGAATGAATCCTCAAAGAAAACACCCCTAGGGCAAGCCACACCAGTCGAAGTGGGAGAAAAAAGAGGGAACATGGTAACTTTCCCCAACACGACCAGAACCAACAACTATGAAAAATTTATGATGCCACCCCCACAACCTCAACCACCATCTTTAGGGGAATATATTCATATTCAAAGAGAACCAAGGGAGAATCATGCCATACCTCCCTCTAAGAGAACTGTGGGAAGAAATCAAGGCTCCAATAAAAAATGCAAATATGCTATTAAGAATGAGGAAGATCCTGATACCATTATGAAAATGATTCATATTAAAATCCCTGCTGGACGTGATGTCGTAGATTCTCTCATCAATGTTGCTATACGCCATCAATCTAACATTACAGTCCTAGGTGGTGTCGGTCTTGTCTCTAATATTACTTTTCACAACTCAGTTTCCCAAGCCCCTGCATTTACAACAGACCAATCTTTTCAAATGACATCTATAACAGGAACCTATTTCATTGCCAATTATGGTCGTAATCCTTCTGAAGTCATCTTTGAACGTATTCATTCCTCTTTTTCCATTTTCCTCACATCTAATTATGGGAAAGTGTTTGGCGGAGTTATTATTGGAAAGGTTATGACTGCAGGTGACGTTTTAATCACAGCCGCTCTTTCAAAGAAGCATGAGTTTTATATGGTTCCCACCATCAATGAAAGAATTCGAGAAGTTGAAGAAGATGTTATCTAA 777 0.3874 MLEDIIAPFFLSKKLKNESSKKTPLGQATPVEVGEKRGNMVTFPNTTRTNNYEKFMMPPPQPQPPSLGEYIHIQREPRENHAIPPSKRTVGRNQGSNKKCKYAIKNEEDPDTIMKMIHIKIPAGRDVVDSLINVAIRHQSNITVLGGVGLVSNITFHNSVSQAPAFTTDQSFQMTSITGTYFIANYGRNPSEVIFERIHSSFSIFLTSNYGKVFGGVIIGKVMTAGDVLITAALSKKHEFYMVPTINERIREVEEDVI 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05978 258 CDD DUF296 119 231 IPR005175 -
Vivi3g05978 258 ProSiteProfiles PPC domain profile profile. 111 258 IPR005175 -
Vivi3g05978 258 Pfam Plants and Prokaryotes Conserved (PCC) domain 117 233 IPR005175 -
Vivi3g05978 258 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 74 246 IPR014476 GO:0003680
Vivi3g05978 258 SUPERFAMILY AF0104/ALDC/Ptd012-like 113 233 - -
Vivi3g05978 258 Gene3D - 114 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05978 Vivi-Chr3 144937472 144938248 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05978 87 249 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 25.455 2.59e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05978 - - vvo:131659117 487.648